| Back to Build/check report for BioC 3.15 experimental data |
|
This page was generated on 2022-10-18 14:50:14 -0400 (Tue, 18 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the yeastCC package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 405/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| yeastCC 1.36.0 (landing page) Sandrine Dudoit
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: yeastCC |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:yeastCC.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings yeastCC_1.36.0.tar.gz |
| StartedAt: 2022-10-18 11:51:08 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 11:51:31 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 23.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: yeastCC.Rcheck |
| Warnings: 2 |
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### Running command:
###
### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:yeastCC.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings yeastCC_1.36.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/yeastCC.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘yeastCC/DESCRIPTION’ ... OK
* this is package ‘yeastCC’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘yeastCC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Warning: large data file saved inefficiently:
size ASCII compress
spYCCmeta.rda 430Kb FALSE none
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
breeden.rda 1.9Mb 1.5Mb xz
spYCCES.rda 757Kb 483Kb xz
spYCCmeta.rda 430Kb 55Kb xz
yeastCC.rda 1.5Mb 484Kb xz
* checking files in ‘vignettes’ ... WARNING
Files in the 'vignettes' directory but no files in 'inst/doc':
‘CellCycle98.txt’, ‘CellCycle98.xls’, ‘KnownGenes.doc’,
‘KnownGenes.txt’, ‘Spellmanetal.pdf’, ‘consistentFHCRC.csv’,
‘createYeastCC.R’, ‘orf800.txt’
Package has no Sweave vignette sources and no VignetteBuilder field.
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/yeastCC.Rcheck/00check.log’
for details.
yeastCC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL yeastCC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘yeastCC’ ... ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (yeastCC)
yeastCC.Rcheck/yeastCC-Ex.timings
| name | user | system | elapsed | |
| breeden | 0.131 | 0.000 | 0.132 | |
| orf800 | 0.001 | 0.000 | 0.001 | |
| spYCCmeta | 0.004 | 0.004 | 0.007 | |
| yeastCC | 0.039 | 0.009 | 0.048 | |