| Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:52 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ewceData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 114/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| ewceData 1.3.0 (landing page) Alan Murphy
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: ewceData |
| Version: 1.3.0 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings ewceData_1.3.0.tar.gz |
| StartedAt: 2022-02-17 07:20:41 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:23:16 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 155.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ewceData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:ewceData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings ewceData_1.3.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/ewceData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ewceData/DESCRIPTION’ ... OK
* this is package ‘ewceData’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ewceData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ctd 5.237 0.152 5.485
cortex_mrna 4.522 0.555 5.160
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ewceData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL ewceData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘ewceData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ewceData)
ewceData.Rcheck/ewceData-Ex.timings
| name | user | system | elapsed | |
| all_hgnc | 3.858 | 0.420 | 4.651 | |
| all_hgnc_wtEnsembl | 1.497 | 0.128 | 1.708 | |
| all_mgi | 1.432 | 0.092 | 1.611 | |
| all_mgi_wtEnsembl | 1.532 | 0.137 | 1.753 | |
| alzh_gwas_top100 | 0.001 | 0.000 | 0.001 | |
| cortex_mrna | 4.522 | 0.555 | 5.160 | |
| ctd | 5.237 | 0.152 | 5.485 | |
| ensembl_transcript_lengths_GCcontent | 1.537 | 0.057 | 1.680 | |
| ewceData-Package | 1.410 | 0.111 | 1.607 | |
| example_genelist | 0.754 | 0.024 | 0.861 | |
| hpsd_genes | 0.836 | 0.028 | 0.948 | |
| hypothalamus_mrna | 1.607 | 0.096 | 1.803 | |
| id_genes | 1.242 | 0.060 | 1.412 | |
| mgi_synonym_data | 2.067 | 0.128 | 2.294 | |
| mouse_to_human_homologs | 1.402 | 0.064 | 1.552 | |
| rbfox_genes | 1.257 | 0.008 | 1.350 | |
| schiz_genes | 1.183 | 0.036 | 1.303 | |
| tt_alzh | 1.650 | 0.272 | 2.014 | |
| tt_alzh_BA36 | 1.041 | 0.039 | 1.164 | |
| tt_alzh_BA44 | 1.097 | 0.024 | 1.205 | |