| Back to Build/check report for BioC 3.15 experimental data |
|
This page was generated on 2022-10-18 14:50:13 -0400 (Tue, 18 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the PREDAsampledata package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 282/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| PREDAsampledata 0.36.0 (landing page) Francesco Ferrari
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: PREDAsampledata |
| Version: 0.36.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings PREDAsampledata_0.36.0.tar.gz |
| StartedAt: 2022-10-18 11:36:49 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 11:38:45 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 115.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PREDAsampledata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:PREDAsampledata.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings PREDAsampledata_0.36.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/PREDAsampledata.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PREDAsampledata/DESCRIPTION’ ... OK
* this is package ‘PREDAsampledata’ version ‘0.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PREDAsampledata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 73.0Mb
sub-directories of 1Mb or more:
data 59.7Mb
sampledata 13.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘Biobase’ ‘PREDA’ ‘affy’ ‘annotate’ ‘methods’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/PREDAsampledata.Rcheck/00check.log’
for details.
PREDAsampledata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL PREDAsampledata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘PREDAsampledata’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PREDAsampledata)
PREDAsampledata.Rcheck/PREDAsampledata-Ex.timings
| name | user | system | elapsed | |
| AffybatchRCC | 4.491 | 0.192 | 4.685 | |
| ExpressionSetRCC | 0.694 | 0.024 | 0.718 | |
| GEanalysisResults | 0.144 | 0.016 | 0.160 | |
| SODEGIRCNDataForPREDA | 0.611 | 0.024 | 0.636 | |
| SODEGIRCNanalysisResults | 0.240 | 0.012 | 0.252 | |
| SODEGIRGEDataForPREDA | 0.249 | 0.004 | 0.253 | |
| SODEGIRGEanalysisResults | 0.552 | 0.048 | 0.600 | |