| Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-10-18 14:50:13 -0400 (Tue, 18 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MouseGastrulationData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 240/410 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| MouseGastrulationData 1.10.0 (landing page) Jonathan Griffiths
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: MouseGastrulationData |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:MouseGastrulationData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings MouseGastrulationData_1.10.0.tar.gz |
| StartedAt: 2022-10-18 11:32:49 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 11:36:55 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 246.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MouseGastrulationData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:MouseGastrulationData.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings MouseGastrulationData_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MouseGastrulationData.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MouseGastrulationData/DESCRIPTION’ ... OK
* this is package ‘MouseGastrulationData’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MouseGastrulationData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Tal1ChimeraData 17.105 1.355 19.920
EmbryoAtlasData 17.376 1.017 20.727
TChimeraData 13.247 0.701 15.281
WTChimeraData 10.539 0.764 12.656
LohoffSeqFISHData 10.122 0.549 12.060
GuibentifExtraData 4.318 0.280 5.355
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
MouseGastrulationData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL MouseGastrulationData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘MouseGastrulationData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MouseGastrulationData)
MouseGastrulationData.Rcheck/MouseGastrulationData-Ex.timings
| name | user | system | elapsed | |
| AtlasSampleMetadata | 0.004 | 0.000 | 0.004 | |
| BPSATACData | 0 | 0 | 0 | |
| EmbryoAtlasData | 17.376 | 1.017 | 20.727 | |
| EmbryoCelltypeColours | 0 | 0 | 0 | |
| GuibentifExtraData | 4.318 | 0.280 | 5.355 | |
| LohoffSeqFISHData | 10.122 | 0.549 | 12.060 | |
| TChimeraData | 13.247 | 0.701 | 15.281 | |
| Tal1ChimeraData | 17.105 | 1.355 | 19.920 | |
| WTChimeraData | 10.539 | 0.764 | 12.656 | |