| Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MEDIPSData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 217/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| MEDIPSData 1.31.1 (landing page) Lukas Chavez
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
| Package: MEDIPSData |
| Version: 1.31.1 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings MEDIPSData_1.31.1.tar.gz |
| StartedAt: 2022-02-17 07:34:11 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:34:51 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 40.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: MEDIPSData.Rcheck |
| Warnings: 2 |
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### Running command:
###
### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:MEDIPSData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings MEDIPSData_1.31.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MEDIPSData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MEDIPSData’ version ‘1.31.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MEDIPSData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 168.8Mb
sub-directories of 1Mb or more:
data 25.0Mb
extdata 143.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... WARNING
File ‘data/datalist’ contains malformed line(s):
‘’
* checking data for non-ASCII characters ... WARNING
Error loading dataset 'CS':
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Error loading dataset 'DE_Input':
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Error loading dataset 'DE_MeDIP':
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Error loading dataset 'hESCs_Input':
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Error loading dataset 'hESCs_MeDIP':
Error in .requirePackage(package) :
unable to find required package 'MEDIPS'
Error loading dataset 'qseaGLM':
Error in .requirePackage(package) :
unable to find required package 'qsea'
Error loading dataset 'qseaSet':
Error in .requirePackage(package) :
unable to find required package 'qsea'
The dataset(s) may use package(s) not declared in the DESCRIPTION file.
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/MEDIPSData.Rcheck/00check.log’
for details.
MEDIPSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL MEDIPSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘MEDIPSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MEDIPSData)
MEDIPSData.Rcheck/MEDIPSData-Ex.timings
| name | user | system | elapsed | |
| CS | 0 | 0 | 0 | |
| DE_Input | 0 | 0 | 0 | |
| DE_MeDIP | 0.001 | 0.000 | 0.000 | |
| NSCLC_dataset | 0.000 | 0.000 | 0.001 | |
| annotation | 0 | 0 | 0 | |
| hESCs_Input | 0.001 | 0.000 | 0.000 | |
| hESCs_MeDIP | 0.000 | 0.000 | 0.001 | |
| mart_gene | 0 | 0 | 0 | |
| resultTable | 0 | 0 | 0 | |
| samplesNSCLC | 0 | 0 | 0 | |
| tcga_luad_lusc_450kmeth | 0 | 0 | 0 | |