| Back to Build/check report for BioC 3.15 experimental data |
|
This page was generated on 2022-02-17 08:36:53 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the KEGGdzPathwaysGEO package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 194/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| KEGGdzPathwaysGEO 1.33.0 (landing page) Gaurav Bhatti
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: KEGGdzPathwaysGEO |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.33.0.tar.gz |
| StartedAt: 2022-02-17 07:31:11 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:38:11 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 419.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: KEGGdzPathwaysGEO.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:KEGGdzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings KEGGdzPathwaysGEO_1.33.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 300.8Mb
sub-directories of 1Mb or more:
data 300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘Biobase’ ‘BiocGenerics’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.
KEGGdzPathwaysGEO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL KEGGdzPathwaysGEO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘KEGGdzPathwaysGEO’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (KEGGdzPathwaysGEO)
KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings
| name | user | system | elapsed | |
| GSE1297 | 0.096 | 0.004 | 0.100 | |
| GSE14762 | 0.209 | 0.004 | 0.214 | |
| GSE15471 | 0.418 | 0.047 | 0.466 | |
| GSE16515 | 0.181 | 0.017 | 0.197 | |
| GSE18842 | 0.475 | 0.039 | 0.514 | |
| GSE19188 | 0.682 | 0.083 | 0.766 | |
| GSE19728 | 0.116 | 0.016 | 0.133 | |
| GSE20153 | 0.113 | 0.000 | 0.112 | |
| GSE20291 | 0.074 | 0.000 | 0.074 | |
| GSE21354 | 0.122 | 0.000 | 0.123 | |
| GSE3467 | 0.121 | 0.000 | 0.121 | |
| GSE3585 | 0.037 | 0.003 | 0.041 | |
| GSE3678 | 0.093 | 0.013 | 0.105 | |
| GSE4107 | 0.137 | 0.000 | 0.136 | |
| GSE5281_EC | 0.127 | 0.003 | 0.131 | |
| GSE5281_HIP | 0.140 | 0.000 | 0.141 | |
| GSE5281_VCX | 0.157 | 0.004 | 0.161 | |
| GSE6956AA | 0.038 | 0.000 | 0.038 | |
| GSE6956C | 0.093 | 0.003 | 0.096 | |
| GSE781 | 0.044 | 0.000 | 0.044 | |
| GSE8671 | 0.273 | 0.000 | 0.274 | |
| GSE8762 | 0.132 | 0.003 | 0.136 | |
| GSE9348 | 0.435 | 0.012 | 0.447 | |
| GSE9476 | 0.143 | 0.016 | 0.158 | |
| KEGGdzPathwaysGEO-package | 0.315 | 0.020 | 0.336 | |