| Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:52 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HDCytoData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 166/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| HDCytoData 1.15.0 (landing page) Lukas M. Weber
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: HDCytoData |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings HDCytoData_1.15.0.tar.gz |
| StartedAt: 2022-02-17 07:27:19 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:33:16 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 357.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HDCytoData.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:HDCytoData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings HDCytoData_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/HDCytoData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HDCytoData/DESCRIPTION’ ... OK
* this is package ‘HDCytoData’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HDCytoData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Samusik_all_SE 11.075 0.712 11.964
Bodenmiller_BCR_XL_SE 6.273 0.352 6.857
Weber_AML_sim_main_5pc_SE 4.741 0.396 5.348
Levine_32dim_SE 4.796 0.328 5.311
Mosmann_rare_SE 4.602 0.248 5.022
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HDCytoData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL HDCytoData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘HDCytoData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-02-15 ** testing if installed package can be loaded from final location snapshotDate(): 2022-02-15 ** testing if installed package keeps a record of temporary installation path * DONE (HDCytoData)
HDCytoData.Rcheck/HDCytoData-Ex.timings
| name | user | system | elapsed | |
| Bodenmiller_BCR_XL_SE | 6.273 | 0.352 | 6.857 | |
| Krieg_Anti_PD_1_SE | 3.901 | 0.240 | 4.312 | |
| Levine_13dim_SE | 2.384 | 0.244 | 2.796 | |
| Levine_32dim_SE | 4.796 | 0.328 | 5.311 | |
| Mosmann_rare_SE | 4.602 | 0.248 | 5.022 | |
| Nilsson_rare_SE | 2.151 | 0.104 | 2.435 | |
| Samusik_01_SE | 2.604 | 0.132 | 2.916 | |
| Samusik_all_SE | 11.075 | 0.712 | 11.964 | |
| Weber_AML_sim_main_5pc_SE | 4.741 | 0.396 | 5.348 | |
| Weber_BCR_XL_sim_main_SE | 2.414 | 0.096 | 2.700 | |