| Back to Build/check report for BioC 3.15 experimental data |
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This page was generated on 2022-02-17 08:36:52 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GSBenchMark package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 147/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| GSBenchMark 1.15.0 (landing page) Bahman Afsari
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: GSBenchMark |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings GSBenchMark_1.15.0.tar.gz |
| StartedAt: 2022-02-17 07:26:01 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 07:26:41 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 39.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: GSBenchMark.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:GSBenchMark.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings GSBenchMark_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/GSBenchMark.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GSBenchMark/DESCRIPTION’ ... OK
* this is package ‘GSBenchMark’ version ‘1.15.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GSBenchMark’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 41.9Mb
sub-directories of 1Mb or more:
data 41.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/GSBenchMark.Rcheck/00check.log’
for details.
GSBenchMark.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL GSBenchMark ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘GSBenchMark’ ... ** using staged installation ** data ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSBenchMark)
GSBenchMark.Rcheck/GSBenchMark-Ex.timings
| name | user | system | elapsed | |
| GSBenchMarkDatasets | 0.214 | 0.021 | 0.235 | |
| bipolar_GDS2190 | 0.234 | 0.008 | 0.242 | |
| breast_GDS807 | 0.229 | 0.004 | 0.233 | |
| diracpathways | 0.007 | 0.000 | 0.007 | |
| exprsdata | 0.341 | 0.019 | 0.361 | |
| leukemia_GSEA | 0.20 | 0.02 | 0.22 | |
| logexprsdata | 0.382 | 0.021 | 0.402 | |
| marfan_GDS2960 | 0.125 | 0.004 | 0.129 | |
| melanoma_GDS2735 | 0.301 | 0.015 | 0.316 | |
| parkinsons_GDS2519 | 0.713 | 0.037 | 0.749 | |
| phenotypes | 0.496 | 0.016 | 0.512 | |
| prostate_GDS2545_m_nf | 0.294 | 0.016 | 0.310 | |
| prostate_GDS2545_m_p | 0.565 | 0.024 | 0.589 | |
| prostate_GDS2545_p_nf | 0.360 | 0.008 | 0.367 | |
| sarcoma_data | 0.675 | 0.064 | 0.739 | |
| squamous_GDS2520 | 0.299 | 0.016 | 0.316 | |