Mercedeh Movassagh
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/mirTarRnaSeq |
| git_branch: master |
| git_last_commit: a28704e |
| git_last_commit_date: 2021-10-26 13:08:24 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:03 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the mirTarRnaSeq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1177/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mirTarRnaSeq 1.3.0 (landing page) Mercedeh Movassagh
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mirTarRnaSeq |
| Version: 1.3.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mirTarRnaSeq.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings mirTarRnaSeq_1.3.0.tar.gz |
| StartedAt: 2022-03-17 19:37:01 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:38:04 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 62.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: mirTarRnaSeq.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mirTarRnaSeq.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings mirTarRnaSeq_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/mirTarRnaSeq.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'mirTarRnaSeq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'mirTarRnaSeq' version '1.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'mirTarRnaSeq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/mirTarRnaSeq.Rcheck/00check.log' for details.
mirTarRnaSeq.Rcheck/00install.out
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL mirTarRnaSeq
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'mirTarRnaSeq' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mirTarRnaSeq'
finding HTML links ... done
Combine html
canonicalModel_ html
combiner html
corMirnaRna html
corMirnaRnaMiranda html
corr_0 html
downloadMirandaFile html
drawCorPlot html
drawInterPlots html
fdrSig html
finInterResult html
final_results html
geneVari html
geneVariant html
getInputSpecies html
glm_gaussian html
glm_multi html
glm_nb html
glm_poisson html
glm_zeroinfl html
glm_zeroinfl_negbin html
glm_zeroinfl_poisson html
importMirandaFile html
inter0 html
mRNA html
mRNA0_2 html
mRNA0_5 html
mRNA2_5 html
mRNA_fc html
mRNA_fc2 html
makeFormulaRightSide html
miRNA html
miRNA0_2 html
miRNA0_5 html
miRNA2_5 html
miRNA_fc html
miRNA_fc2 html
miRanComp html
miRanda html
miRandaIntersect html
miRandaM html
mirRnaDensityCor html
mirRnaDensityInter html
mirRnaHeatmap html
mirRnaHeatmapDiff html
mirandaIntersectInter html
modelAIC html
modelCoefficients html
modelData html
modelModelName html
modelModelPvalue html
modelTermPvalues html
modelsFilter html
one2OneRnaMiRNA html
outs html
outs2 html
plotFit html
plotResiduals html
plotTerms html
results html
runAllMirnaModels html
runModel html
runModels html
sampCorRnaMirna html
sig_InterR html
sig_corrs html
some_model html
threshSig html
threshSigInter html
twoTimePoint html
twoTimePointSamp html
tzTrans html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mirTarRnaSeq)
Making 'packages.html' ... done
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
| name | user | system | elapsed | |
| combiner | 0.01 | 0.00 | 0.02 | |
| corMirnaRna | 0.03 | 0.02 | 0.04 | |
| corMirnaRnaMiranda | 0.10 | 0.05 | 0.14 | |
| downloadMirandaFile | 0 | 0 | 0 | |
| drawCorPlot | 0 | 0 | 0 | |
| drawInterPlots | 0.01 | 0.00 | 0.02 | |
| fdrSig | 0.52 | 0.03 | 0.55 | |
| finInterResult | 0 | 0 | 0 | |
| geneVari | 0 | 0 | 0 | |
| getInputSpecies | 0.28 | 0.06 | 0.35 | |
| glm_gaussian | 0 | 0 | 0 | |
| glm_multi | 0 | 0 | 0 | |
| glm_nb | 0 | 0 | 0 | |
| glm_poisson | 0 | 0 | 0 | |
| glm_zeroinfl | 0 | 0 | 0 | |
| glm_zeroinfl_negbin | 0 | 0 | 0 | |
| glm_zeroinfl_poisson | 0 | 0 | 0 | |
| importMirandaFile | 0 | 0 | 0 | |
| makeFormulaRightSide | 0 | 0 | 0 | |
| miRanComp | 0.04 | 0.00 | 0.05 | |
| miRandaIntersect | 0.03 | 0.00 | 0.03 | |
| mirRnaDensityCor | 0.04 | 0.00 | 0.03 | |
| mirRnaDensityInter | 0 | 0 | 0 | |
| mirRnaHeatmap | 1.06 | 0.08 | 1.14 | |
| mirRnaHeatmapDiff | 0.06 | 0.02 | 0.08 | |
| mirandaIntersectInter | 0.02 | 0.00 | 0.01 | |
| modelAIC | 0.07 | 0.00 | 0.08 | |
| modelCoefficients | 0 | 0 | 0 | |
| modelData | 0 | 0 | 0 | |
| modelModelName | 0 | 0 | 0 | |
| modelModelPvalue | 0 | 0 | 0 | |
| modelTermPvalues | 0 | 0 | 0 | |
| modelsFilter | 0 | 0 | 0 | |
| one2OneRnaMiRNA | 0 | 0 | 0 | |
| plotFit | 0.00 | 0.01 | 0.02 | |
| plotResiduals | 0 | 0 | 0 | |
| plotTerms | 0.02 | 0.00 | 0.01 | |
| runAllMirnaModels | 0.45 | 0.00 | 0.46 | |
| runModels | 0.43 | 0.02 | 0.43 | |
| sampCorRnaMirna | 0.48 | 0.22 | 0.71 | |
| threshSig | 0 | 0 | 0 | |
| threshSigInter | 0.02 | 0.00 | 0.01 | |
| twoTimePoint | 0 | 0 | 0 | |
| twoTimePointSamp | 0 | 0 | 0 | |
| tzTrans | 0.01 | 0.00 | 0.02 | |