Federico Marini
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/flowcatchR |
| git_branch: master |
| git_last_commit: fdcb2b6 |
| git_last_commit_date: 2021-11-06 09:43:03 -0400 (Sat, 06 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:31 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the flowcatchR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowcatchR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 654/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowcatchR 1.29.1 (landing page) Federico Marini
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: flowcatchR |
| Version: 1.29.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowcatchR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowcatchR_1.29.1.tar.gz |
| StartedAt: 2022-03-17 19:06:10 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:07:22 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 71.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: flowcatchR.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:flowcatchR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings flowcatchR_1.29.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/flowcatchR.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowcatchR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'flowcatchR' version '1.29.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'flowcatchR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to 'EBImage' which was already attached by Depends. Please remove these calls from your code. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/flowcatchR.Rcheck/00check.log' for details.
flowcatchR.Rcheck/00install.out
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL flowcatchR
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'flowcatchR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowcatchR'
finding HTML links ... done
Frames-class html
Frames html
KinematicsFeatures-class html
KinematicsFeaturesSet-class html
LinkedParticleSet-class html
MesenteriumSubset html
ParticleSet-class html
TrajectorySet-class html
add.contours html
addParticles html
axesInfo html
candidate.platelets html
channel.Frames html
computeMSD html
crop.Frames html
finding level-2 HTML links ... done
export.Frames html
export.particles html
extractKinematics.traj html
flowcatchR-pkg html
initialize.LinkedParticleSet html
inspect.Frames html
kinematics html
length.Frames html
link.particles html
matchTrajToParticles html
normalizeFrames html
particles html
penaltyFunctionGenerator html
plot.TrajectorySet html
plot2D.TrajectorySet html
preprocess.Frames html
read.Frames html
read.particles html
repmat html
rotate.Frames html
select.Frames html
select.particles html
shinyFlow html
show-Frames-method html
show-KinematicsFeatures-method html
show-KinematicsFeaturesSet-method html
show-LinkedParticleSet-method html
show-ParticleSet-method html
show-TrajectorySet-method html
snap html
toCartesianCoords html
toPolarCoords html
trajectories html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowcatchR)
Making 'packages.html' ... done
flowcatchR.Rcheck/flowcatchR-Ex.timings
| name | user | system | elapsed | |
| Frames | 0.17 | 0.08 | 0.25 | |
| add.contours | 0 | 0 | 0 | |
| channel.Frames | 0.17 | 0.08 | 0.25 | |
| crop.Frames | 0.21 | 0.03 | 0.23 | |
| export.Frames | 0 | 0 | 0 | |
| export.particles | 0.00 | 0.02 | 0.02 | |
| inspect.Frames | 0 | 0 | 0 | |
| kinematics | 0.14 | 0.03 | 0.17 | |
| length.Frames | 0.11 | 0.00 | 0.11 | |
| link.particles | 0.07 | 0.00 | 0.08 | |
| matchTrajToParticles | 0.13 | 0.00 | 0.12 | |
| normalizeFrames | 0.95 | 0.36 | 1.31 | |
| particles | 0 | 0 | 0 | |
| penaltyFunctionGenerator | 0 | 0 | 0 | |
| plot.TrajectorySet | 0.11 | 0.02 | 0.13 | |
| plot2D.TrajectorySet | 0.17 | 0.03 | 0.20 | |
| preprocess.Frames | 0.47 | 0.22 | 0.69 | |
| read.Frames | 0 | 0 | 0 | |
| read.particles | 0 | 0 | 0 | |
| rotate.Frames | 0.14 | 0.09 | 0.23 | |
| select.Frames | 0.35 | 0.36 | 0.71 | |
| select.particles | 0.01 | 0.00 | 0.01 | |
| shinyFlow | 0 | 0 | 0 | |
| show-Frames-method | 0.03 | 0.08 | 0.11 | |
| show-KinematicsFeatures-method | 0.09 | 0.01 | 0.11 | |
| show-KinematicsFeaturesSet-method | 0.24 | 0.04 | 0.26 | |
| show-LinkedParticleSet-method | 0.09 | 0.01 | 0.11 | |
| show-ParticleSet-method | 0 | 0 | 0 | |
| show-TrajectorySet-method | 0.09 | 0.03 | 0.13 | |
| snap | 0 | 0 | 0 | |
| trajectories | 0.13 | 0.00 | 0.12 | |