Zuguang Gu
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/cola |
| git_branch: master |
| git_last_commit: b1d6f9d |
| git_last_commit_date: 2021-10-26 12:49:03 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:14 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the cola package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cola.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 372/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cola 2.1.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cola |
| Version: 2.1.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cola.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cola_2.1.0.tar.gz |
| StartedAt: 2022-03-17 18:47:07 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:50:45 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 218.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: cola.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cola.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cola_2.1.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/cola.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cola/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cola' version '2.1.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cola' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.0Mb
sub-directories of 1Mb or more:
data 3.5Mb
extdata 1.0Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'D:/biocbuild/bbs-3.15-bioc/R/library/cola/libs/x64/cola.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
consensus_partition 1.61 0.01 29.05
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.15-bioc/meat/cola.Rcheck/00check.log'
for details.
cola.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cola
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'cola' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c atc.cpp -o atc.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c cal_consensus_mat.cpp -o cal_consensus_mat.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c pdist.cpp -o pdist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o atc.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-cola/00new/cola/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cola'
finding HTML links ... done
ATC html
ATC_approx html
ConsensusPartition-class html
ConsensusPartitionList-class html
DownSamplingConsensusPartition-class html
Extract.ConsensusPartitionList html
Extract.HierarchicalPartition html
ExtractExtract.ConsensusPartitionList html
ExtractExtract.HierarchicalPartition html
FCC html
HierarchicalPartition-class html
PAC html
aPAC html
adjust_matrix html
adjust_outlier html
all_leaves-HierarchicalPartition-method
html
all_nodes-HierarchicalPartition-method
html
all_partition_methods html
all_top_value_methods html
cola html
cola_opt html
cola_report-ConsensusPartition-method html
cola_report-ConsensusPartitionList-method
html
cola_report-HierarchicalPartition-method
html
cola_report-dispatch html
cola_rl html
collect_classes-ConsensusPartition-method
html
collect_classes-ConsensusPartitionList-method
html
collect_classes-HierarchicalPartition-method
html
collect_classes-dispatch html
collect_plots-ConsensusPartition-method
html
collect_plots-ConsensusPartitionList-method
html
collect_plots-dispatch html
collect_stats-ConsensusPartition-method
html
collect_stats-ConsensusPartitionList-method
html
collect_stats-dispatch html
colnames-ConsensusPartition-method html
colnames-ConsensusPartitionList-method
html
colnames-DownSamplingConsensusPartition-method
html
colnames-HierarchicalPartition-method html
colnames-dispatch html
compare_partitions-ConsensusPartition-method
html
compare_signatures-ConsensusPartition-method
html
compare_signatures-HierarchicalPartition-method
html
compare_signatures-dispatch html
concordance html
config_ATC html
consensus_heatmap-ConsensusPartition-method
html
consensus_partition html
consensus_partition_by_down_sampling html
correspond_between_rankings html
correspond_between_two_rankings html
david_enrichment html
dim.ConsensusPartition html
dim.ConsensusPartitionList html
dim.DownSamplingConsensusPartition html
dim.HierarchicalPartition html
dimension_reduction-ConsensusPartition-method
html
dimension_reduction-DownSamplingConsensusPartition-method
html
dimension_reduction-HierarchicalPartition-method
html
dimension_reduction-dispatch html
dimension_reduction-matrix-method html
find_best_km html
functional_enrichment-ANY-method html
functional_enrichment-ConsensusPartition-method
html
functional_enrichment-ConsensusPartitionList-method
html
functional_enrichment-HierarchicalPartition-method
html
functional_enrichment-dispatch html
get_anno-ConsensusPartition-method html
get_anno-ConsensusPartitionList-method
html
get_anno-DownSamplingConsensusPartition-method
html
get_anno-HierarchicalPartition-method html
get_anno-dispatch html
get_anno_col-ConsensusPartition-method
html
get_anno_col-ConsensusPartitionList-method
html
get_anno_col-HierarchicalPartition-method
html
get_anno_col-dispatch html
get_children_nodes-HierarchicalPartition-method
html
get_classes-ConsensusPartition-method html
get_classes-ConsensusPartitionList-method
html
get_classes-DownSamplingConsensusPartition-method
html
get_classes-HierarchicalPartition-method
html
get_classes-dispatch html
get_consensus-ConsensusPartition-method
html
get_matrix-ConsensusPartition-method html
get_matrix-ConsensusPartitionList-method
html
get_matrix-HierarchicalPartition-method
html
get_matrix-dispatch html
get_membership-ConsensusPartition-method
html
get_membership-ConsensusPartitionList-method
html
get_membership-dispatch html
get_param-ConsensusPartition-method html
get_signatures-ConsensusPartition-method
html
get_signatures-DownSamplingConsensusPartition-method
html
get_signatures-HierarchicalPartition-method
html
get_signatures-dispatch html
get_stats-ConsensusPartition-method html
get_stats-ConsensusPartitionList-method
html
get_stats-dispatch html
golub_cola html
golub_cola_ds html
golub_cola_rh html
hierarchical_partition html
is_best_k-ConsensusPartition-method html
is_best_k-ConsensusPartitionList-method
html
is_best_k-dispatch html
is_leaf_node-HierarchicalPartition-method
html
is_stable_k-ConsensusPartition-method html
is_stable_k-ConsensusPartitionList-method
html
is_stable_k-dispatch html
knee_finder2 html
knitr_add_tab_item html
knitr_insert_tabs html
map_to_entrez_id html
max_depth-HierarchicalPartition-method
html
membership_heatmap-ConsensusPartition-method
html
merge_node-HierarchicalPartition-method
html
merge_node_param html
ncol-ConsensusPartition-method html
ncol-ConsensusPartitionList-method html
ncol-DownSamplingConsensusPartition-method
html
ncol-HierarchicalPartition-method html
ncol-dispatch html
node_info-HierarchicalPartition-method
html
node_level-HierarchicalPartition-method
html
nrow-ConsensusPartition-method html
nrow-ConsensusPartitionList-method html
nrow-HierarchicalPartition-method html
nrow-dispatch html
plot_ecdf-ConsensusPartition-method html
predict_classes-ConsensusPartition-method
html
finding level-2 HTML links ... done
predict_classes-dispatch html
predict_classes-matrix-method html
print.hc_table_suggest_best_k html
recalc_stats html
register_NMF html
register_SOM html
register_partition_methods html
register_top_value_methods html
relabel_class html
remove_partition_methods html
remove_top_value_methods html
rownames-ConsensusPartition-method html
rownames-ConsensusPartitionList-method
html
rownames-HierarchicalPartition-method html
rownames-dispatch html
run_all_consensus_partition_methods html
select_partition_number-ConsensusPartition-method
html
show-ConsensusPartition-method html
show-ConsensusPartitionList-method html
show-DownSamplingConsensusPartition-method
html
show-HierarchicalPartition-method html
show-dispatch html
split_node-HierarchicalPartition-method
html
suggest_best_k-ConsensusPartition-method
html
suggest_best_k-ConsensusPartitionList-method
html
suggest_best_k-HierarchicalPartition-method
html
suggest_best_k-dispatch html
test_between_factors html
test_to_known_factors-ConsensusPartition-method
html
test_to_known_factors-ConsensusPartitionList-method
html
test_to_known_factors-DownSamplingConsensusPartition-method
html
test_to_known_factors-HierarchicalPartition-method
html
test_to_known_factors-dispatch html
top_elements_overlap html
top_rows_heatmap-ConsensusPartition-method
html
top_rows_heatmap-ConsensusPartitionList-method
html
top_rows_heatmap-HierarchicalPartition-method
html
top_rows_heatmap-dispatch html
top_rows_heatmap-matrix-method html
top_rows_overlap-ConsensusPartitionList-method
html
top_rows_overlap-HierarchicalPartition-method
html
top_rows_overlap-dispatch html
top_rows_overlap-matrix-method html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cola)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'BRAIN' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'sangerseqR' is missing or broken
done
cola.Rcheck/tests/test-all.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(cola)))
>
> test_check("cola")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ]
>
>
> proc.time()
user system elapsed
3.65 0.51 21.39
cola.Rcheck/cola-Ex.timings
| name | user | system | elapsed | |
| ATC | 0.03 | 0.00 | 0.03 | |
| ATC_approx | 0 | 0 | 0 | |
| ConsensusPartition-class | 0 | 0 | 0 | |
| ConsensusPartitionList-class | 0 | 0 | 0 | |
| DownSamplingConsensusPartition-class | 0 | 0 | 0 | |
| Extract.ConsensusPartitionList | 0.33 | 0.02 | 0.34 | |
| Extract.HierarchicalPartition | 0.11 | 0.01 | 0.12 | |
| ExtractExtract.ConsensusPartitionList | 0.19 | 0.02 | 0.21 | |
| ExtractExtract.HierarchicalPartition | 0 | 0 | 0 | |
| FCC | 0.12 | 0.01 | 0.14 | |
| HierarchicalPartition-class | 0 | 0 | 0 | |
| PAC | 0.36 | 0.00 | 0.36 | |
| aPAC | 0.13 | 0.00 | 0.12 | |
| adjust_matrix | 0 | 0 | 0 | |
| adjust_outlier | 0 | 0 | 0 | |
| all_leaves-HierarchicalPartition-method | 0.09 | 0.00 | 0.09 | |
| all_nodes-HierarchicalPartition-method | 0.1 | 0.0 | 0.1 | |
| all_partition_methods | 0 | 0 | 0 | |
| all_top_value_methods | 0 | 0 | 0 | |
| cola | 0.04 | 0.00 | 0.04 | |
| cola_opt | 0.03 | 0.00 | 0.03 | |
| cola_report-ConsensusPartition-method | 0 | 0 | 0 | |
| cola_report-ConsensusPartitionList-method | 0 | 0 | 0 | |
| cola_report-HierarchicalPartition-method | 0 | 0 | 0 | |
| cola_report-dispatch | 0 | 0 | 0 | |
| cola_rl | 0.08 | 0.01 | 0.10 | |
| collect_classes-ConsensusPartition-method | 1.47 | 0.13 | 1.59 | |
| collect_classes-ConsensusPartitionList-method | 2.36 | 0.02 | 2.38 | |
| collect_classes-HierarchicalPartition-method | 1.34 | 0.12 | 1.46 | |
| collect_classes-dispatch | 0 | 0 | 0 | |
| collect_plots-ConsensusPartition-method | 0 | 0 | 0 | |
| collect_plots-ConsensusPartitionList-method | 0 | 0 | 0 | |
| collect_plots-dispatch | 0 | 0 | 0 | |
| collect_stats-ConsensusPartition-method | 0 | 0 | 0 | |
| collect_stats-ConsensusPartitionList-method | 0.35 | 0.02 | 0.36 | |
| collect_stats-dispatch | 0 | 0 | 0 | |
| colnames-ConsensusPartition-method | 0 | 0 | 0 | |
| colnames-ConsensusPartitionList-method | 0 | 0 | 0 | |
| colnames-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
| colnames-HierarchicalPartition-method | 0 | 0 | 0 | |
| colnames-dispatch | 0 | 0 | 0 | |
| compare_partitions-ConsensusPartition-method | 0 | 0 | 0 | |
| compare_signatures-ConsensusPartition-method | 0 | 0 | 0 | |
| compare_signatures-HierarchicalPartition-method | 4.33 | 0.20 | 4.54 | |
| compare_signatures-dispatch | 0 | 0 | 0 | |
| concordance | 0.09 | 0.03 | 0.12 | |
| config_ATC | 0 | 0 | 0 | |
| consensus_heatmap-ConsensusPartition-method | 0.42 | 0.02 | 0.43 | |
| consensus_partition | 1.61 | 0.01 | 29.05 | |
| consensus_partition_by_down_sampling | 0 | 0 | 0 | |
| correspond_between_rankings | 0.08 | 0.00 | 0.11 | |
| correspond_between_two_rankings | 0.03 | 0.00 | 0.03 | |
| david_enrichment | 0 | 0 | 0 | |
| dim.ConsensusPartition | 0 | 0 | 0 | |
| dim.ConsensusPartitionList | 0 | 0 | 0 | |
| dim.DownSamplingConsensusPartition | 0 | 0 | 0 | |
| dim.HierarchicalPartition | 0 | 0 | 0 | |
| dimension_reduction-ConsensusPartition-method | 0.89 | 0.03 | 0.92 | |
| dimension_reduction-DownSamplingConsensusPartition-method | 1.60 | 0.07 | 1.65 | |
| dimension_reduction-HierarchicalPartition-method | 0.62 | 0.04 | 0.68 | |
| dimension_reduction-dispatch | 0 | 0 | 0 | |
| dimension_reduction-matrix-method | 0 | 0 | 0 | |
| find_best_km | 0 | 0 | 0 | |
| functional_enrichment-ANY-method | 0 | 0 | 0 | |
| functional_enrichment-ConsensusPartition-method | 0 | 0 | 0 | |
| functional_enrichment-ConsensusPartitionList-method | 0 | 0 | 0 | |
| functional_enrichment-HierarchicalPartition-method | 0 | 0 | 0 | |
| functional_enrichment-dispatch | 0 | 0 | 0 | |
| get_anno-ConsensusPartition-method | 0 | 0 | 0 | |
| get_anno-ConsensusPartitionList-method | 0 | 0 | 0 | |
| get_anno-DownSamplingConsensusPartition-method | 0.08 | 0.02 | 0.09 | |
| get_anno-HierarchicalPartition-method | 0 | 0 | 0 | |
| get_anno-dispatch | 0 | 0 | 0 | |
| get_anno_col-ConsensusPartition-method | 0 | 0 | 0 | |
| get_anno_col-ConsensusPartitionList-method | 0 | 0 | 0 | |
| get_anno_col-HierarchicalPartition-method | 0 | 0 | 0 | |
| get_anno_col-dispatch | 0 | 0 | 0 | |
| get_children_nodes-HierarchicalPartition-method | 0 | 0 | 0 | |
| get_classes-ConsensusPartition-method | 0.11 | 0.05 | 0.15 | |
| get_classes-ConsensusPartitionList-method | 0.14 | 0.02 | 0.16 | |
| get_classes-DownSamplingConsensusPartition-method | 0.05 | 0.01 | 0.06 | |
| get_classes-HierarchicalPartition-method | 0.14 | 0.00 | 0.14 | |
| get_classes-dispatch | 0 | 0 | 0 | |
| get_consensus-ConsensusPartition-method | 0.18 | 0.03 | 0.22 | |
| get_matrix-ConsensusPartition-method | 0.44 | 0.25 | 0.69 | |
| get_matrix-ConsensusPartitionList-method | 0.33 | 0.33 | 0.65 | |
| get_matrix-HierarchicalPartition-method | 0 | 0 | 0 | |
| get_matrix-dispatch | 0 | 0 | 0 | |
| get_membership-ConsensusPartition-method | 0.11 | 0.05 | 0.16 | |
| get_membership-ConsensusPartitionList-method | 0.12 | 0.00 | 0.13 | |
| get_membership-dispatch | 0 | 0 | 0 | |
| get_param-ConsensusPartition-method | 0.11 | 0.01 | 0.13 | |
| get_signatures-ConsensusPartition-method | 4.27 | 0.28 | 4.65 | |
| get_signatures-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
| get_signatures-HierarchicalPartition-method | 0 | 0 | 0 | |
| get_signatures-dispatch | 0 | 0 | 0 | |
| get_stats-ConsensusPartition-method | 0.20 | 0.02 | 0.22 | |
| get_stats-ConsensusPartitionList-method | 0.19 | 0.00 | 0.19 | |
| get_stats-dispatch | 0 | 0 | 0 | |
| golub_cola | 0.18 | 0.02 | 0.20 | |
| golub_cola_ds | 0.1 | 0.0 | 0.1 | |
| golub_cola_rh | 0.12 | 0.00 | 0.12 | |
| hierarchical_partition | 0 | 0 | 0 | |
| is_best_k-ConsensusPartition-method | 0.11 | 0.03 | 0.14 | |
| is_best_k-ConsensusPartitionList-method | 0.16 | 0.00 | 0.16 | |
| is_best_k-dispatch | 0 | 0 | 0 | |
| is_leaf_node-HierarchicalPartition-method | 0.09 | 0.00 | 0.09 | |
| is_stable_k-ConsensusPartition-method | 0.13 | 0.01 | 0.14 | |
| is_stable_k-ConsensusPartitionList-method | 0.07 | 0.05 | 0.13 | |
| is_stable_k-dispatch | 0 | 0 | 0 | |
| knee_finder2 | 0.02 | 0.02 | 0.03 | |
| knitr_add_tab_item | 0 | 0 | 0 | |
| knitr_insert_tabs | 0 | 0 | 0 | |
| map_to_entrez_id | 0 | 0 | 0 | |
| max_depth-HierarchicalPartition-method | 0.08 | 0.03 | 0.11 | |
| membership_heatmap-ConsensusPartition-method | 0.33 | 0.06 | 0.39 | |
| merge_node-HierarchicalPartition-method | 0 | 0 | 0 | |
| merge_node_param | 0 | 0 | 0 | |
| ncol-ConsensusPartition-method | 0 | 0 | 0 | |
| ncol-ConsensusPartitionList-method | 0 | 0 | 0 | |
| ncol-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
| ncol-HierarchicalPartition-method | 0 | 0 | 0 | |
| ncol-dispatch | 0 | 0 | 0 | |
| node_info-HierarchicalPartition-method | 0 | 0 | 0 | |
| node_level-HierarchicalPartition-method | 0 | 0 | 0 | |
| nrow-ConsensusPartition-method | 0 | 0 | 0 | |
| nrow-ConsensusPartitionList-method | 0 | 0 | 0 | |
| nrow-HierarchicalPartition-method | 0 | 0 | 0 | |
| nrow-dispatch | 0 | 0 | 0 | |
| plot_ecdf-ConsensusPartition-method | 0.12 | 0.03 | 0.15 | |
| predict_classes-ConsensusPartition-method | 0 | 0 | 0 | |
| predict_classes-dispatch | 0 | 0 | 0 | |
| predict_classes-matrix-method | 0 | 0 | 0 | |
| print.hc_table_suggest_best_k | 0 | 0 | 0 | |
| recalc_stats | 0 | 0 | 0 | |
| register_NMF | 0 | 0 | 0 | |
| register_SOM | 0 | 0 | 0 | |
| register_partition_methods | 0.54 | 0.00 | 0.55 | |
| register_top_value_methods | 0 | 0 | 0 | |
| relabel_class | 0 | 0 | 0 | |
| remove_partition_methods | 0 | 0 | 0 | |
| remove_top_value_methods | 0 | 0 | 0 | |
| rownames-ConsensusPartition-method | 0 | 0 | 0 | |
| rownames-ConsensusPartitionList-method | 0 | 0 | 0 | |
| rownames-HierarchicalPartition-method | 0 | 0 | 0 | |
| rownames-dispatch | 0 | 0 | 0 | |
| run_all_consensus_partition_methods | 0 | 0 | 0 | |
| select_partition_number-ConsensusPartition-method | 0.12 | 0.02 | 0.14 | |
| show-ConsensusPartition-method | 0 | 0 | 0 | |
| show-ConsensusPartitionList-method | 0 | 0 | 0 | |
| show-DownSamplingConsensusPartition-method | 0.08 | 0.00 | 0.08 | |
| show-HierarchicalPartition-method | 0.13 | 0.00 | 0.13 | |
| show-dispatch | 0 | 0 | 0 | |
| split_node-HierarchicalPartition-method | 0 | 0 | 0 | |
| suggest_best_k-ConsensusPartition-method | 0.11 | 0.01 | 0.12 | |
| suggest_best_k-ConsensusPartitionList-method | 0.12 | 0.02 | 0.14 | |
| suggest_best_k-HierarchicalPartition-method | 0.13 | 0.00 | 0.13 | |
| suggest_best_k-dispatch | 0 | 0 | 0 | |
| test_between_factors | 0 | 0 | 0 | |
| test_to_known_factors-ConsensusPartition-method | 0.17 | 0.02 | 0.19 | |
| test_to_known_factors-ConsensusPartitionList-method | 0.28 | 0.05 | 0.33 | |
| test_to_known_factors-DownSamplingConsensusPartition-method | 0.13 | 0.00 | 0.12 | |
| test_to_known_factors-HierarchicalPartition-method | 0.12 | 0.03 | 0.16 | |
| test_to_known_factors-dispatch | 0 | 0 | 0 | |
| top_elements_overlap | 0.25 | 0.00 | 0.25 | |
| top_rows_heatmap-ConsensusPartition-method | 0 | 0 | 0 | |
| top_rows_heatmap-ConsensusPartitionList-method | 0 | 0 | 0 | |
| top_rows_heatmap-HierarchicalPartition-method | 0 | 0 | 0 | |
| top_rows_heatmap-dispatch | 0 | 0 | 0 | |
| top_rows_heatmap-matrix-method | 2.21 | 0.57 | 2.88 | |
| top_rows_overlap-ConsensusPartitionList-method | 0.61 | 0.10 | 0.70 | |
| top_rows_overlap-HierarchicalPartition-method | 0.49 | 0.00 | 0.49 | |
| top_rows_overlap-dispatch | 0 | 0 | 0 | |
| top_rows_overlap-matrix-method | 0.12 | 0.00 | 0.12 | |