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This page was generated on 2022-03-18 11:08:58 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for ViSEAGO on riesling1


To the developers/maintainers of the ViSEAGO package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ViSEAGO.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2059/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ViSEAGO 1.9.0  (landing page)
Aurelien Brionne
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/ViSEAGO
git_branch: master
git_last_commit: 0d62b70
git_last_commit_date: 2021-10-26 12:52:59 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'AnnotationForge' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: ViSEAGO
Version: 1.9.0
Command: rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.9.0.tar.gz
StartedAt: 2022-03-17 21:47:12 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:48:38 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 86.2 seconds
RetCode: 0
Status:   OK  
PackageFile: ViSEAGO_1.9.0.zip
PackageFileSize: 9.141 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ViSEAGO.buildbin-libdir && mkdir ViSEAGO.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=ViSEAGO.buildbin-libdir ViSEAGO_1.9.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'ViSEAGO' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
** help
*** installing help indices
  converting help for package 'ViSEAGO'
    finding HTML links ... done
    Bioconductor2GO                         html  
    Custom2GO                               html  
    Ensembl2GO                              html  
    EntrezGene2GO                           html  
    EntrezGene_orthologs                    html  
    GO_SS-class                             html  
    GO_clusters-class                       html  
    GOclusters_heatmap-methods              html  
    GOcount-methods                         html  
    GOterms_heatmap-methods                 html  
    MDSplot-methods                         html  
    Uniprot2GO                              html  
    Upset-methods                           html  
    ViSEAGO                                 html  
    annotate-methods                        html  
    available_organisms-methods             html  
    build_GO_SS-methods                     html  
    clusters_cor-methods                    html  
    compare_clusters-methods                html  
    compute_SS_distances-methods            html  
    create_topGOdata-methods                html  
    enrich_GO_terms-class                   html  
    fgsea-class                             html  
    gene2GO-class                           html  
    genomic_ressource-class                 html  
    merge_enrich_terms-methods              html  
    myGOs                                   html  
    overLapper                              html  
    finding level-2 HTML links ... done

    pkgdiagram                              html  
    runfgsea-methods                        html  
    show_heatmap-methods                    html  
    show_table-methods                      html  
    taxonomy                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'data.table::set' by 'dendextend::set' when loading 'ViSEAGO'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ViSEAGO' as ViSEAGO_1.9.0.zip
* DONE (ViSEAGO)