| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:22:27 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TTMap package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TTMap.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2069/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TTMap 1.18.0 (landing page) Rachel Jeitziner
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: TTMap |
| Version: 1.18.0 |
| Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TTMap.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TTMap_1.18.0.tar.gz |
| StartedAt: 2022-10-19 05:00:41 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 05:04:14 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 212.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TTMap.Rcheck |
| Warnings: 0 |
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### Running command:
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### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TTMap.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TTMap_1.18.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/TTMap.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'TTMap/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TTMap' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TTMap' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ttmap_sgn_genes 13.71 0.31 14.03
calcul_e 13.08 0.43 13.53
ttmap 11.89 0.30 12.22
hyperrectangle_deviation_assessment 11.11 0.21 11.33
control_adjustment 9.66 0.29 9.98
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
TTMap.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TTMap ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'TTMap' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TTMap)
TTMap.Rcheck/TTMap-Ex.timings
| name | user | system | elapsed | |
| TTMap-package | 0 | 0 | 0 | |
| calcul_e | 13.08 | 0.43 | 13.53 | |
| control_adjustment | 9.66 | 0.29 | 9.98 | |
| generate_correlation | 0 | 0 | 0 | |
| hyperrectangle_deviation_assessment | 11.11 | 0.21 | 11.33 | |
| make_matrices | 2.66 | 0.13 | 2.78 | |
| ttmap | 11.89 | 0.30 | 12.22 | |
| ttmap_sgn_genes | 13.71 | 0.31 | 14.03 | |
| write_pcl | 3.78 | 0.03 | 3.81 | |