Florian Auer
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/RCX |
| git_branch: master |
| git_last_commit: 22d7eb0 |
| git_last_commit_date: 2021-12-20 11:06:15 -0400 (Mon, 20 Dec 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:26 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RCX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1558/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCX 0.99.2 (landing page) Florian Auer
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RCX |
| Version: 0.99.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCX.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RCX_0.99.2.tar.gz |
| StartedAt: 2022-03-17 20:01:31 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:02:28 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 57.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCX.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCX.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings RCX_0.99.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/RCX.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'RCX/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'RCX' version '0.99.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'RCX' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
RCX.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL RCX
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'RCX' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RCX'
finding HTML links ... done
CartesianLayout html
Convert-Names-and-Classes html
CyGroups html
CyHiddenAttributes html
CyNetworkRelations html
CySubNetworks html
CyTableColumn html
CyVisualProperties html
CyVisualProperty html
CyVisualPropertyDependencies html
CyVisualPropertyMappings html
CyVisualPropertyProperties html
EdgeAttributes html
Edges html
Igraph html
Meta-data html
NetworkAttributes html
NodeAttributes html
Nodes html
RCX-object html
RCX html
aspectClasses html
checks html
convert-data-types-and-values html
convert2json html
countElements html
custom-print html
dot-addAspectNameToJson html
dot-addAttributeData html
dot-aspectClass html
dot-convertRawList html
dot-createAttributeAspect html
dot-createCyVpPorD html
dot-errorCodes html
dot-filterBy html
dot-format html
dot-infer html
dot-json2RDataType html
dot-jsonL html
dot-jsonV html
dot-log html
dot-mergeAttributesAspect html
dot-mergeIdAspect html
dot-modClass html
dot-pasteC html
dot-renameDF html
dot-stop html
dot-summaryAspect html
dot-transformListLength-set html
dot-transformVLD html
dot-validateAttributesAspect html
dot-validateCyVisualPropertyPandD html
dot_test html
getCyVisualProperty html
graphNEL html
hasIds html
idProperty html
jsonToRCX html
finding level-2 HTML links ... done
markAttributeColumn html
markRefColumn html
maxId html
rcxToJson html
readCX html
referredBy html
refersTo html
summary html
toCX html
updateCartesianLayout html
updateCyGroups html
updateCyHiddenAttributes html
updateCyNetworkRelations html
updateCySubNetworks html
updateCyTableColumn html
updateCyVisualProperties html
updateCyVisualProperty html
updateEdgeAttributes html
updateEdges html
updateMetaDataProperties html
updateNetworkAttributes html
updateNodeAttributes html
updateNodes html
validate html
visualize html
writeCX html
writeHTML html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RCX)
Making 'packages.html' ... done
RCX.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(RCX)
>
> test_check("RCX")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 60 ]
>
> proc.time()
user system elapsed
2.37 0.18 2.56
RCX.Rcheck/RCX-Ex.timings
| name | user | system | elapsed | |
| CartesianLayout | 0.00 | 0.01 | 0.02 | |
| Convert-Names-and-Classes | 0 | 0 | 0 | |
| CyGroups | 0 | 0 | 0 | |
| CyHiddenAttributes | 0.14 | 0.00 | 0.14 | |
| CyNetworkRelations | 0 | 0 | 0 | |
| CySubNetworks | 0 | 0 | 0 | |
| CyTableColumn | 0 | 0 | 0 | |
| CyVisualProperties | 0.01 | 0.00 | 0.02 | |
| CyVisualProperty | 0.01 | 0.00 | 0.02 | |
| CyVisualPropertyDependencies | 0 | 0 | 0 | |
| CyVisualPropertyMappings | 0 | 0 | 0 | |
| CyVisualPropertyProperties | 0 | 0 | 0 | |
| EdgeAttributes | 0 | 0 | 0 | |
| Edges | 0.02 | 0.00 | 0.02 | |
| Igraph | 2.17 | 0.04 | 2.20 | |
| Meta-data | 0.03 | 0.00 | 0.03 | |
| NetworkAttributes | 0.02 | 0.00 | 0.02 | |
| NodeAttributes | 0 | 0 | 0 | |
| Nodes | 0 | 0 | 0 | |
| RCX-object | 0.17 | 0.00 | 0.18 | |
| aspectClasses | 0 | 0 | 0 | |
| checks | 0 | 0 | 0 | |
| convert-data-types-and-values | 0 | 0 | 0 | |
| convert2json | 0 | 0 | 0 | |
| countElements | 0.02 | 0.00 | 0.01 | |
| custom-print | 0 | 0 | 0 | |
| dot-addAspectNameToJson | 0 | 0 | 0 | |
| dot-addAttributeData | 0 | 0 | 0 | |
| dot-aspectClass | 0 | 0 | 0 | |
| dot-convertRawList | 0 | 0 | 0 | |
| dot-createAttributeAspect | 0 | 0 | 0 | |
| dot-createCyVpPorD | 0 | 0 | 0 | |
| dot-filterBy | 0 | 0 | 0 | |
| dot-format | 0 | 0 | 0 | |
| dot-infer | 0 | 0 | 0 | |
| dot-json2RDataType | 0 | 0 | 0 | |
| dot-jsonL | 0 | 0 | 0 | |
| dot-jsonV | 0.01 | 0.00 | 0.02 | |
| dot-log | 0 | 0 | 0 | |
| dot-mergeAttributesAspect | 0 | 0 | 0 | |
| dot-mergeIdAspect | 0 | 0 | 0 | |
| dot-modClass | 0 | 0 | 0 | |
| dot-pasteC | 0 | 0 | 0 | |
| dot-renameDF | 0 | 0 | 0 | |
| dot-stop | 0 | 0 | 0 | |
| dot-summaryAspect | 0 | 0 | 0 | |
| dot-transformListLength-set | 0 | 0 | 0 | |
| dot-transformVLD | 0 | 0 | 0 | |
| getCyVisualProperty | 0.02 | 0.00 | 0.01 | |
| graphNEL | 2.79 | 0.00 | 2.80 | |
| hasIds | 0 | 0 | 0 | |
| idProperty | 0 | 0 | 0 | |
| jsonToRCX | 0.02 | 0.00 | 0.02 | |
| markAttributeColumn | 0 | 0 | 0 | |
| markRefColumn | 0 | 0 | 0 | |
| maxId | 0 | 0 | 0 | |
| rcxToJson | 0 | 0 | 0 | |
| readCX | 0.53 | 0.00 | 0.53 | |
| referredBy | 0 | 0 | 0 | |
| refersTo | 0 | 0 | 0 | |
| summary | 0.01 | 0.00 | 0.02 | |
| toCX | 0.02 | 0.00 | 0.01 | |
| updateCartesianLayout | 0.03 | 0.00 | 0.03 | |
| updateCyGroups | 0.03 | 0.00 | 0.04 | |
| updateCyHiddenAttributes | 0.03 | 0.00 | 0.03 | |
| updateCyNetworkRelations | 0.02 | 0.02 | 0.03 | |
| updateCySubNetworks | 0.03 | 0.00 | 0.03 | |
| updateCyTableColumn | 0.03 | 0.00 | 0.03 | |
| updateCyVisualProperties | 0.19 | 0.00 | 0.19 | |
| updateCyVisualProperty | 0.08 | 0.00 | 0.08 | |
| updateEdgeAttributes | 0.04 | 0.00 | 0.04 | |
| updateEdges | 0.03 | 0.00 | 0.03 | |
| updateMetaDataProperties | 0.03 | 0.00 | 0.04 | |
| updateNetworkAttributes | 0.05 | 0.00 | 0.04 | |
| updateNodeAttributes | 0.05 | 0.00 | 0.05 | |
| updateNodes | 0.01 | 0.00 | 0.02 | |
| validate | 0.22 | 0.01 | 0.23 | |
| visualize | 0.02 | 0.00 | 0.02 | |
| writeCX | 0 | 0 | 0 | |
| writeHTML | 0.26 | 0.10 | 0.54 | |