| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-04-12 11:08:33 -0400 (Tue, 12 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" | 4379 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-03-17 r81925 ucrt) -- "Unsuffered Consequences" | 4127 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-17 r81925) -- "Unsuffered Consequences" | 4190 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the PrecisionTrialDrawer package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PrecisionTrialDrawer.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1472/2113 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PrecisionTrialDrawer 1.11.0 (landing page) Giorgio Melloni
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PrecisionTrialDrawer |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz |
| StartedAt: 2022-04-12 05:44:47 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:50:43 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 356.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PrecisionTrialDrawer.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PrecisionTrialDrawer.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PrecisionTrialDrawer_1.11.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/PrecisionTrialDrawer.Rcheck’
* using R Under development (unstable) (2022-03-17 r81925)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PrecisionTrialDrawer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PrecisionTrialDrawer’ version ‘1.11.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PrecisionTrialDrawer’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
newCancerPanel 13.897 0.454 27.276
panelDesigner 7.343 0.087 18.362
getAlterations 0.258 0.007 13.628
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PrecisionTrialDrawer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PrecisionTrialDrawer ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘PrecisionTrialDrawer’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package can be loaded from final location Creating a generic function for ‘toJSON’ from package ‘jsonlite’ in package ‘googleVis’ ** testing if installed package keeps a record of temporary installation path * DONE (PrecisionTrialDrawer)
PrecisionTrialDrawer.Rcheck/PrecisionTrialDrawer-Ex.timings
| name | user | system | elapsed | |
| CancerPanel-class | 0.002 | 0.001 | 0.002 | |
| PrecisionTrialDrawer-package | 0.365 | 0.011 | 0.376 | |
| appendRepo | 1.108 | 0.014 | 1.123 | |
| coocMutexPlot | 2.464 | 0.049 | 2.517 | |
| coveragePlot | 0.316 | 0.014 | 0.332 | |
| coverageStackPlot | 0.377 | 0.009 | 0.388 | |
| cpArguments | 0.025 | 0.003 | 0.028 | |
| cpData | 0.029 | 0.003 | 0.032 | |
| cpDataSubset | 0.016 | 0.003 | 0.018 | |
| cpDesign | 0.033 | 0.002 | 0.035 | |
| cpFreq | 0.367 | 0.026 | 0.394 | |
| cpObj | 0.309 | 0.009 | 0.319 | |
| cpObj2 | 0.064 | 0.004 | 0.068 | |
| dataExtractor | 0.654 | 0.008 | 0.666 | |
| filterFusions | 0.616 | 0.013 | 0.632 | |
| filterMutations | 1.531 | 0.025 | 1.561 | |
| getAlterations | 0.258 | 0.007 | 13.628 | |
| newCancerPanel | 13.897 | 0.454 | 27.276 | |
| panelDesigner | 7.343 | 0.087 | 18.362 | |
| panelOptimizer | 0.001 | 0.000 | 0.001 | |
| panelexample | 0.006 | 0.001 | 0.007 | |
| propPowerSampleSize | 1.372 | 0.018 | 1.392 | |
| saturationPlot | 2.884 | 0.057 | 2.945 | |
| showCancerStudy | 0.024 | 0.001 | 0.074 | |
| showTumorType | 0.070 | 0.001 | 0.092 | |
| subsetAlterations | 0.781 | 0.031 | 0.814 | |
| survPowerSampleSize | 1.076 | 0.007 | 1.085 | |
| survPowerSampleSize1Arm | 1.254 | 0.016 | 1.272 | |