Hai Fang
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/Pi |
| git_branch: master |
| git_last_commit: 69e9b10 |
| git_last_commit_date: 2021-11-30 03:53:10 -0400 (Tue, 30 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:18 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Pi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Pi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1424/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Pi 2.7.3 (landing page) Hai Fang
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: Pi |
| Version: 2.7.3 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Pi.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings Pi_2.7.3.tar.gz |
| StartedAt: 2022-03-17 19:52:28 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:55:20 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 172.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Pi.Rcheck |
| Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Pi.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings Pi_2.7.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/Pi.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Pi/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Pi' version '2.7.3' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Pi' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi' See 'D:/biocbuild/bbs-3.15-bioc/meat/Pi.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: 'pbapply' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs See 'D:/biocbuild/bbs-3.15-bioc/meat/Pi.Rcheck/00check.log' for details.
Pi.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Pi
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Pi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** help
*** installing help indices
converting help for package 'Pi'
finding HTML links ... done
EG html
GS html
aOnto html
cTarget html
dTarget html
eGSEA html
eTarget html
eTerm html
iSubg html
ls_eTerm html
pNode html
pPerf html
sGS html
sTarget html
xAggregate html
xCheckParallel html
xCircos html
xColormap html
xCombineNet html
xContour html
xConverter html
xCorrelation html
xDAGanno html
xDefineEQTL html
xDefineHIC html
xDefineNet html
xDefineOntology html
xEnrichForest html
xEnrichViewer html
xEnricher html
xEnricherGenes html
xGGnetwork html
xGR html
xGR2nGenes html
xGR2xGeneScores html
xGR2xGenes html
xGRscores html
xGRsort html
xGSEAbarplot html
xGSEAconciser html
xGSEAdotplot html
xGSsimulator html
xGeneID2Symbol html
xHeatmap html
xLayout html
xLiftOver html
xMEabf html
xMLcaret html
xMLcompare html
xMLdensity html
xMLdotplot html
xMLfeatureplot html
xMLglmnet html
xMLparameters html
xMLrandomforest html
xMLrename html
xMLzoom html
xPieplot html
xPier html
xPierABF html
xPierABFheatmap html
xPierAnno html
xPierCor html
xPierCross html
xPierEvidence html
xPierGRs html
xPierGSEA html
xPierGenes html
xPierMRS html
xPierManhattan html
xPierMatrix html
xPierPathways html
xPierROCR html
xPierSNPs html
xPierSNPsAdv html
xPierSNPsAdvABF html
xPierSubnet html
xPierTrack html
xPierTrackAdv html
xPredictCompare html
xPredictROCR html
xRDataLoader html
xRWR html
xSM2DF html
xSNP2cGenes html
xSNP2eGenes html
xSNP2nGenes html
xSNPlocations html
xSNPscores html
xSparseMatrix html
xSubneterGenes html
xSymbol2GeneID html
xVisEvidence html
xVisEvidenceAdv html
xVisKernels html
xVisNet html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'ROCR::plot' by 'graphics::plot' when loading 'Pi'
** testing if installed package keeps a record of temporary installation path
* DONE (Pi)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'KnowSeq' is missing or broken
done
Pi.Rcheck/Pi-Ex.timings
| name | user | system | elapsed | |
| EG | 0 | 0 | 0 | |
| GS | 0 | 0 | 0 | |
| aOnto | 0 | 0 | 0 | |
| cTarget | 0 | 0 | 0 | |
| dTarget | 0 | 0 | 0 | |
| eGSEA | 0 | 0 | 0 | |
| eTarget | 0 | 0 | 0 | |
| eTerm | 0 | 0 | 0 | |
| iSubg | 0 | 0 | 0 | |
| ls_eTerm | 0 | 0 | 0 | |
| pNode | 0 | 0 | 0 | |
| pPerf | 0 | 0 | 0 | |
| sGS | 0 | 0 | 0 | |
| sTarget | 0 | 0 | 0 | |
| xAggregate | 0 | 0 | 0 | |
| xCheckParallel | 0 | 0 | 0 | |
| xCircos | 0 | 0 | 0 | |
| xColormap | 0.02 | 0.00 | 0.00 | |
| xCombineNet | 0 | 0 | 0 | |
| xContour | 0.03 | 0.00 | 0.03 | |
| xConverter | 0.01 | 0.00 | 0.02 | |
| xCorrelation | 0 | 0 | 0 | |
| xDAGanno | 0 | 0 | 0 | |
| xDefineEQTL | 0 | 0 | 0 | |
| xDefineHIC | 0.00 | 0.01 | 0.02 | |
| xDefineNet | 0 | 0 | 0 | |
| xDefineOntology | 0 | 0 | 0 | |
| xEnrichForest | 0 | 0 | 0 | |
| xEnrichViewer | 0 | 0 | 0 | |
| xEnricher | 0 | 0 | 0 | |
| xEnricherGenes | 0 | 0 | 0 | |
| xGGnetwork | 0 | 0 | 0 | |
| xGR | 0 | 0 | 0 | |
| xGR2nGenes | 0 | 0 | 0 | |
| xGR2xGeneScores | 0 | 0 | 0 | |
| xGR2xGenes | 0 | 0 | 0 | |
| xGRscores | 0 | 0 | 0 | |
| xGRsort | 0 | 0 | 0 | |
| xGSEAbarplot | 0 | 0 | 0 | |
| xGSEAconciser | 0 | 0 | 0 | |
| xGSEAdotplot | 0 | 0 | 0 | |
| xGSsimulator | 0 | 0 | 0 | |
| xGeneID2Symbol | 0 | 0 | 0 | |
| xHeatmap | 0 | 0 | 0 | |
| xLayout | 0.00 | 0.02 | 0.01 | |
| xLiftOver | 0 | 0 | 0 | |
| xMEabf | 0 | 0 | 0 | |
| xMLcaret | 0 | 0 | 0 | |
| xMLcompare | 0 | 0 | 0 | |
| xMLdensity | 0 | 0 | 0 | |
| xMLdotplot | 0 | 0 | 0 | |
| xMLfeatureplot | 0 | 0 | 0 | |
| xMLglmnet | 0 | 0 | 0 | |
| xMLparameters | 0 | 0 | 0 | |
| xMLrandomforest | 0 | 0 | 0 | |
| xMLrename | 0 | 0 | 0 | |
| xMLzoom | 0 | 0 | 0 | |
| xPieplot | 0 | 0 | 0 | |
| xPier | 0 | 0 | 0 | |
| xPierABF | 0 | 0 | 0 | |
| xPierABFheatmap | 0 | 0 | 0 | |
| xPierAnno | 0 | 0 | 0 | |
| xPierCor | 0 | 0 | 0 | |
| xPierCross | 0 | 0 | 0 | |
| xPierEvidence | 0 | 0 | 0 | |
| xPierGRs | 0 | 0 | 0 | |
| xPierGSEA | 0 | 0 | 0 | |
| xPierGenes | 0 | 0 | 0 | |
| xPierMRS | 0 | 0 | 0 | |
| xPierManhattan | 0 | 0 | 0 | |
| xPierMatrix | 0 | 0 | 0 | |
| xPierPathways | 0 | 0 | 0 | |
| xPierROCR | 0 | 0 | 0 | |
| xPierSNPs | 0 | 0 | 0 | |
| xPierSNPsAdv | 0 | 0 | 0 | |
| xPierSNPsAdvABF | 0 | 0 | 0 | |
| xPierSubnet | 0 | 0 | 0 | |
| xPierTrack | 0 | 0 | 0 | |
| xPierTrackAdv | 0 | 0 | 0 | |
| xPredictCompare | 0 | 0 | 0 | |
| xPredictROCR | 0 | 0 | 0 | |
| xRDataLoader | 0 | 0 | 0 | |
| xRWR | 0 | 0 | 0 | |
| xSM2DF | 0.01 | 0.00 | 0.01 | |
| xSNP2cGenes | 0 | 0 | 0 | |
| xSNP2eGenes | 0 | 0 | 0 | |
| xSNP2nGenes | 0 | 0 | 0 | |
| xSNPlocations | 0 | 0 | 0 | |
| xSNPscores | 0 | 0 | 0 | |
| xSparseMatrix | 0 | 0 | 0 | |
| xSubneterGenes | 0 | 0 | 0 | |
| xSymbol2GeneID | 0 | 0 | 0 | |
| xVisEvidence | 0 | 0 | 0 | |
| xVisEvidenceAdv | 0 | 0 | 0 | |
| xVisKernels | 0.05 | 0.02 | 0.06 | |
| xVisNet | 0 | 0 | 0 | |