Koustav Pal
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/HiCBricks |
| git_branch: master |
| git_last_commit: 2a085ec |
| git_last_commit_date: 2022-01-01 07:34:42 -0400 (Sat, 01 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:45 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 869/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.13.2 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HiCBricks |
| Version: 1.13.2 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HiCBricks_1.13.2.tar.gz |
| StartedAt: 2022-03-17 19:18:40 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:23:01 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 261.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HiCBricks.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings HiCBricks_1.13.2.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/HiCBricks.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HiCBricks/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HiCBricks' version '1.13.2'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HiCBricks' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
Brick_export_to_sparse 3.07 0.60 5.66
Brick_vizart_plot_heatmap 2.14 0.43 6.00
Brick_local_score_differentiator 1.64 0.37 5.18
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
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###
### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL HiCBricks
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'HiCBricks' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HiCBricks'
finding HTML links ... done
BrickContainer_change_experiment_name html
BrickContainer_change_output_directory
html
BrickContainer_get_path_to_file html
BrickContainer_list_chromosomes html
BrickContainer_list_experiment_name html
BrickContainer_list_files html
BrickContainer_list_output_directory html
BrickContainer_list_resolutions html
BrickContainer_unlink_resolution html
Brick_add_ranges html
Brick_call_compartments html
Brick_export_to_sparse html
Brick_fetch_range_index html
Brick_fetch_row_vector html
Brick_get_bintable html
Brick_get_chrominfo html
Brick_get_entire_matrix html
Brick_get_matrix html
Brick_get_matrix_mcols html
Brick_get_matrix_within_coords html
Brick_get_ranges html
Brick_get_values_by_distance html
Brick_get_vector_values html
Brick_list_matrices html
Brick_list_matrix_mcols html
Brick_list_mcool_normalisations html
Brick_list_mcool_resolutions html
Brick_list_rangekeys html
Brick_list_ranges_mcols html
Brick_load_cis_matrix_till_distance html
Brick_load_data_from_mcool html
Brick_load_data_from_sparse html
Brick_load_matrix html
Brick_local_score_differentiator html
Brick_make_ranges html
Brick_matrix_dimensions html
Brick_matrix_exists html
Brick_matrix_filename html
Brick_matrix_isdone html
Brick_matrix_issparse html
Brick_matrix_maxdist html
Brick_matrix_minmax html
Brick_mcool_normalisation_exists html
Brick_rangekey_exists html
Brick_return_region_position html
Brick_vizart_plot_heatmap html
Create_many_Bricks html
Create_many_Bricks_from_mcool html
HiCBricks html
load_BrickContainer html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiCBricks)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'sitePath' is missing or broken
done
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.29 | 0.25 | 2.97 | |
| BrickContainer_change_output_directory | 1.16 | 0.25 | 2.80 | |
| BrickContainer_get_path_to_file | 0.92 | 0.17 | 2.92 | |
| BrickContainer_list_chromosomes | 0.98 | 0.22 | 2.51 | |
| BrickContainer_list_experiment_name | 0.89 | 0.18 | 2.49 | |
| BrickContainer_list_files | 1.02 | 0.25 | 2.75 | |
| BrickContainer_list_output_directory | 1.05 | 0.25 | 2.47 | |
| BrickContainer_list_resolutions | 1.00 | 0.20 | 2.96 | |
| BrickContainer_unlink_resolution | 2.34 | 0.40 | 4.16 | |
| Brick_add_ranges | 1.77 | 0.40 | 3.52 | |
| Brick_call_compartments | 1.78 | 0.40 | 3.76 | |
| Brick_export_to_sparse | 3.07 | 0.60 | 5.66 | |
| Brick_fetch_range_index | 0.99 | 0.20 | 2.50 | |
| Brick_fetch_row_vector | 1.55 | 0.50 | 4.28 | |
| Brick_get_bintable | 0.89 | 0.19 | 2.00 | |
| Brick_get_chrominfo | 0.79 | 0.23 | 1.97 | |
| Brick_get_entire_matrix | 1.49 | 0.31 | 3.25 | |
| Brick_get_matrix | 1.54 | 0.36 | 3.97 | |
| Brick_get_matrix_mcols | 1.31 | 0.44 | 3.22 | |
| Brick_get_matrix_within_coords | 1.57 | 0.34 | 4.39 | |
| Brick_get_ranges | 1.01 | 0.14 | 3.58 | |
| Brick_get_values_by_distance | 1.45 | 0.33 | 3.81 | |
| Brick_get_vector_values | 1.14 | 0.46 | 3.42 | |
| Brick_list_matrices | 0.80 | 0.15 | 2.63 | |
| Brick_list_matrix_mcols | 0.83 | 0.17 | 2.50 | |
| Brick_list_mcool_normalisations | 0 | 0 | 0 | |
| Brick_list_mcool_resolutions | 0 | 0 | 0 | |
| Brick_list_rangekeys | 0.81 | 0.21 | 2.80 | |
| Brick_list_ranges_mcols | 1.00 | 0.18 | 3.14 | |
| Brick_load_cis_matrix_till_distance | 1.05 | 0.18 | 2.28 | |
| Brick_load_data_from_mcool | 0 | 0 | 0 | |
| Brick_load_data_from_sparse | 0 | 0 | 0 | |
| Brick_load_matrix | 1.14 | 0.39 | 4.22 | |
| Brick_local_score_differentiator | 1.64 | 0.37 | 5.18 | |
| Brick_make_ranges | 0.02 | 0.00 | 0.02 | |
| Brick_matrix_dimensions | 1.39 | 0.38 | 4.28 | |
| Brick_matrix_exists | 1.15 | 0.45 | 3.35 | |
| Brick_matrix_filename | 1.42 | 0.36 | 3.32 | |
| Brick_matrix_isdone | 1.18 | 0.39 | 3.14 | |
| Brick_matrix_issparse | 1.23 | 0.36 | 3.54 | |
| Brick_matrix_maxdist | 1.14 | 0.41 | 3.51 | |
| Brick_matrix_minmax | 1.14 | 0.39 | 4.99 | |
| Brick_mcool_normalisation_exists | 0 | 0 | 0 | |
| Brick_rangekey_exists | 0.96 | 0.21 | 2.90 | |
| Brick_return_region_position | 1.00 | 0.22 | 2.11 | |
| Brick_vizart_plot_heatmap | 2.14 | 0.43 | 6.00 | |
| Create_many_Bricks | 0.84 | 0.25 | 2.09 | |
| Create_many_Bricks_from_mcool | 0 | 0 | 0 | |
| load_BrickContainer | 1.02 | 0.21 | 1.90 | |