Estefania Mancini
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/ASpli |
| git_branch: master |
| git_last_commit: 14aea67 |
| git_last_commit_date: 2021-10-26 12:29:18 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:06:57 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ASpli package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 87/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ASpli 2.5.0 (landing page) Estefania Mancini
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ASpli |
| Version: 2.5.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ASpli.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ASpli_2.5.0.tar.gz |
| StartedAt: 2022-03-17 18:27:58 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 18:41:49 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 831.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ASpli.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ASpli_2.5.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/ASpli.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '2.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 111.17 0.22 111.39
exportSplicingReports 59.27 0.20 59.56
exportIntegratedSignals 58.57 0.14 58.71
splicingReport 53.93 0.04 53.97
jDUreport 52.64 0.08 53.59
integrateSignals 52.56 0.03 52.59
gbDUreport-method 51.89 0.03 51.92
jCounts-methods 50.00 0.08 50.64
gbCounts 48.19 0.02 48.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
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###
### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ASpli
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-deprecated html
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
ASpliIntegratedSignals-class html
ASpliJDU-class html
ASpliSplicingReport-class html
DUreport html
finding level-2 HTML links ... done
DUreport.norm html
DUreport.offset html
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_JDU html
acc_MergedReport html
acc_counts html
acc_features html
acc_is html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
exportIntegratedSignals html
exportSplicingReports html
filterDU-method html
filterSignals html
gbCounts html
gbDUreport-method html
getConditions-function html
integrateSignals html
jCounts-methods html
jDUreport html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
show-methods html
splicingReport html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ASpli)
Making 'packages.html' ... done
ASpli.Rcheck/ASpli-Ex.timings
| name | user | system | elapsed | |
| ASpli-package | 111.17 | 0.22 | 111.39 | |
| DUreport | 0 | 0 | 0 | |
| DUreport.norm | 0 | 0 | 0 | |
| DUreport.offset | 0 | 0 | 0 | |
| DUreportBinSplice-method | 0 | 0 | 0 | |
| acc_AS | 0 | 0 | 0 | |
| acc_DU | 0 | 0 | 0 | |
| acc_counts | 0 | 0 | 0 | |
| acc_features | 0.11 | 0.00 | 0.11 | |
| binGenome | 2.71 | 0.02 | 2.73 | |
| containsJunctions-function | 0 | 0 | 0 | |
| example_data | 0 | 0 | 0 | |
| exportIntegratedSignals | 58.57 | 0.14 | 58.71 | |
| exportSplicingReports | 59.27 | 0.20 | 59.56 | |
| filterDU-method | 0 | 0 | 0 | |
| filterSignals | 0 | 0 | 0 | |
| gbCounts | 48.19 | 0.02 | 48.21 | |
| gbDUreport-method | 51.89 | 0.03 | 51.92 | |
| getConditions-function | 0 | 0 | 0 | |
| integrateSignals | 52.56 | 0.03 | 52.59 | |
| jCounts-methods | 50.00 | 0.08 | 50.64 | |
| jDUreport | 52.64 | 0.08 | 53.59 | |
| junctionDUreport | 0 | 0 | 0 | |
| loadBAM | 0 | 0 | 0 | |
| mergeBinDUAS-method | 0 | 0 | 0 | |
| plotBins | 0 | 0 | 0 | |
| plotGenomicRegions | 0 | 0 | 0 | |
| rds | 0 | 0 | 0 | |
| splicingReport | 53.93 | 0.04 | 53.97 | |
| subset-methods | 0 | 0 | 0 | |