| Back to Multiple platform build/check report for BioC 3.14 | 
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This page was generated on 2022-04-13 12:06:07 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 | 
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 | 
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the wpm package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/wpm.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 2066/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| wpm 1.4.0  (landing page) Helene Borges 
 | nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |  | ||||||||
| Package: wpm | 
| Version: 1.4.0 | 
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:wpm.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings wpm_1.4.0.tar.gz | 
| StartedAt: 2022-04-12 09:52:25 -0400 (Tue, 12 Apr 2022) | 
| EndedAt: 2022-04-12 09:53:18 -0400 (Tue, 12 Apr 2022) | 
| EllapsedTime: 52.7 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: wpm.Rcheck | 
| Warnings: 0 | 
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:wpm.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings wpm_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/wpm.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘wpm/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘wpm’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘wpm’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
wpm.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL wpm
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘wpm’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
── This is the Well-Plate Maker package. ───────────────────────────────────────
If you want to use the shiny application, then simply run: `wpm()`.If you want
to see the Tutorial vignette and use WPM in command line, run:
`browseVignettes('wpm')`.
** testing if installed package can be loaded from final location
── This is the Well-Plate Maker package. ───────────────────────────────────────
If you want to use the shiny application, then simply run: `wpm()`.If you want
to see the Tutorial vignette and use WPM in command line, run:
`browseVignettes('wpm')`.
** testing if installed package keeps a record of temporary installation path
* DONE (wpm)
wpm.Rcheck/tests/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(wpm)
── This is the Well-Plate Maker package. ───────────────────────────────────────
If you want to use the shiny application, then simply run: `wpm()`.If you want
to see the Tutorial vignette and use WPM in command line, run:
`browseVignettes('wpm')`.
cli-1133851-1
> testthat::test_check("wpm")
2022-04-12 09:53:04 WARNING::the dimensions of the plate are incompatible with
                             the wells.
2022-04-12 09:53:04 WARNING::the dimensions of the plate are incompatible with
                             the wells.
2022-04-12 09:53:04 INFO::gp_fiels: Group, class: character
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 12 ]
> 
> proc.time()
   user  system elapsed 
 11.209   1.082  12.277 
wpm.Rcheck/wpm-Ex.timings
| name | user | system | elapsed | |
| convertCSV | 0.083 | 0.000 | 0.082 | |
| convertESet | 4.408 | 0.196 | 4.604 | |
| convertSE | 4.380 | 0.272 | 4.652 | |
| convertVector2Df | 0.038 | 0.000 | 0.038 | |
| drawMap | 0.440 | 0.068 | 0.507 | |
| wpm | 0 | 0 | 0 | |
| wrapperWPM | 0.167 | 0.008 | 0.176 | |