Stefano Mangiola
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/tidybulk |
| git_branch: RELEASE_3_14 |
| git_last_commit: 13706d8 |
| git_last_commit_date: 2021-10-28 23:23:06 -0400 (Thu, 28 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:28 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the tidybulk package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tidybulk.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1950/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| tidybulk 1.6.1 (landing page) Stefano Mangiola
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: tidybulk |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tidybulk_1.6.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.6.1.zip && rm tidybulk_1.6.1.tar.gz tidybulk_1.6.1.zip |
| StartedAt: 2022-04-12 06:26:39 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:30:44 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 245.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/tidybulk_1.6.1.tar.gz && rm -rf tidybulk.buildbin-libdir && mkdir tidybulk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tidybulk.buildbin-libdir tidybulk_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL tidybulk_1.6.1.zip && rm tidybulk_1.6.1.tar.gz tidybulk_1.6.1.zip
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install for i386
* installing *source* package 'tidybulk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'floor'
Note: wrong number of arguments to 'floor'
** help
*** installing help indices
converting help for package 'tidybulk'
finding HTML links ... done
X_cibersort html
adjust_abundance-methods html
aggregate_duplicates-methods html
arrange-methods html
as_SummarizedExperiment-methods html
as_matrix html
bind-methods html
breast_tcga_mini_SE html
check_if_counts_is_na html
check_if_duplicated_genes html
check_if_wrong_input html
cluster_elements-methods html
counts_SE html
counts_ensembl html
deconvolve_cellularity-methods html
describe_transcript-methods html
distinct-methods html
dplyr-methods html
ensembl_symbol_mapping html
ensembl_to_symbol-methods html
fill_missing_abundance-methods html
filter-methods html
flybaseIDs html
get_bibliography-methods html
get_reduced_dimensions_UMAP_bulk html
get_reduced_dimensions_UMAP_bulk_SE html
group_by-methods html
identify_abundant-methods html
impute_missing_abundance-methods html
join-methods html
keep_abundant-methods html
keep_variable-methods html
log10_reverse_trans html
logit_trans html
mutate-methods html
nest-methods html
pipe html
pivot_sample-methods html
pivot_transcript-methods html
reduce_dimensions-methods html
reexports html
remove_redundancy-methods html
rename-methods html
rotate_dimensions-methods html
rowwise-methods html
scale_abundance-methods html
se html
se_mini html
summarise-methods html
symbol_to_entrez html
test_deseq2_df html
test_differential_abundance-methods html
test_differential_cellularity-methods html
test_gene_enrichment-methods html
test_gene_overrepresentation-methods html
test_gene_rank-methods html
test_stratification_cellularity-methods
html
tidybulk-methods html
tidybulk_SAM_BAM-methods html
vignette_manuscript_signature_boxplot html
vignette_manuscript_signature_tsne html
vignette_manuscript_signature_tsne2 html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'tidybulk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tidybulk' as tidybulk_1.6.1.zip
* DONE (tidybulk)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'tidybulk' successfully unpacked and MD5 sums checked