Koki Tsuyuzaki
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/scTGIF |
| git_branch: RELEASE_3_14 |
| git_last_commit: d5fbf5a |
| git_last_commit_date: 2021-10-26 12:55:54 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:19 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the scTGIF package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scTGIF.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1748/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scTGIF 1.8.0 (landing page) Koki Tsuyuzaki
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: scTGIF |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTGIF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scTGIF_1.8.0.tar.gz |
| StartedAt: 2022-04-13 02:37:50 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 02:44:15 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 385.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: scTGIF.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:scTGIF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings scTGIF_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scTGIF.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'scTGIF/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'scTGIF' version '1.8.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'scTGIF' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported object imported by a ':::' call: 'schex:::.make_hexbin_function' See the note in ?`:::` about the use of this operator. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/scTGIF.Rcheck/00check.log' for details.
scTGIF.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/scTGIF_1.8.0.tar.gz && rm -rf scTGIF.buildbin-libdir && mkdir scTGIF.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scTGIF.buildbin-libdir scTGIF_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL scTGIF_1.8.0.zip && rm scTGIF_1.8.0.tar.gz scTGIF_1.8.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
6 2471k 6 157k 0 0 593k 0 0:00:04 --:--:-- 0:00:04 593k
67 2471k 67 1674k 0 0 1322k 0 0:00:01 0:00:01 --:--:-- 1322k
100 2471k 100 2471k 0 0 1510k 0 0:00:01 0:00:01 --:--:-- 1509k
install for i386
* installing *source* package 'scTGIF' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scTGIF'
finding HTML links ... done
DistalLungEpithelium html
calcTGIF html
cellMarkerToGmt html
convertRowID html
label.DistalLungEpithelium html
pca.DistalLungEpithelium html
reportTGIF html
scTGIF-package html
settingTGIF html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'scTGIF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scTGIF' as scTGIF_1.8.0.zip
* DONE (scTGIF)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'scTGIF' successfully unpacked and MD5 sums checked
|
scTGIF.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("scTGIF")
>
> options(testthat.use_colours = FALSE)
>
> test_file("testthat/test_DistalLungEpithelium.R")
== Testing test_DistalLungEpithelium.R =========================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] Done!
> test_file("testthat/test_TGIFFunctions.R")
== Testing test_TGIFFunctions.R ================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] Done!
> test_file("testthat/test_convertRowID.R")
== Testing test_convertRowID.R =================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
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[ FAIL 5 | WARN 3 | SKIP 0 | PASS 12 ]
[ FAIL 5 | WARN 4 | SKIP 0 | PASS 12 ]
[ FAIL 6 | WARN 4 | SKIP 0 | PASS 12 ]
[ FAIL 6 | WARN 5 | SKIP 0 | PASS 12 ]
[ FAIL 6 | WARN 5 | SKIP 0 | PASS 13 ]
[ FAIL 6 | WARN 6 | SKIP 0 | PASS 13 ]
[ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ]
-- Failure (test_convertRowID.R:48:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_convertRowID.R:51:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:53:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean")
at test_convertRowID.R:53:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:54:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:56:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.var")
at test_convertRowID.R:56:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Warning (test_convertRowID.R:59:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2")
at test_convertRowID.R:59:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:112:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_convertRowID.R:115:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:117:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean")
at test_convertRowID.R:117:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:118:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:120:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.var")
at test_convertRowID.R:120:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Warning (test_convertRowID.R:123:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2")
at test_convertRowID.R:123:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
[ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ]
> test_file("testthat/test_cellMarkerToGmt.R")
== Testing test_cellMarkerToGmt.R ==============================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 1 ]
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[ FAIL 0 | WARN 4 | SKIP 0 | PASS 3 ]
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[ FAIL 0 | WARN 4 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ]
-- Warning (test_cellMarkerToGmt.R:134:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Meniscus
Backtrace:
1. GSEABase::getGmt(outfile2_1)
at test_cellMarkerToGmt.R:134:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:135:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Meniscus
Backtrace:
1. GSEABase::getGmt(outfile2_2)
at test_cellMarkerToGmt.R:135:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:140:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Pancreas
Backtrace:
1. GSEABase::getGmt(outfile3_1)
at test_cellMarkerToGmt.R:140:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:141:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Pancreas
Backtrace:
1. GSEABase::getGmt(outfile3_2)
at test_cellMarkerToGmt.R:141:0
2. GSEABase:::.warningf(...)
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ]
>
> proc.time()
user system elapsed
14.03 1.39 15.40
|
scTGIF.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("scTGIF")
>
> options(testthat.use_colours = FALSE)
>
> test_file("testthat/test_DistalLungEpithelium.R")
== Testing test_DistalLungEpithelium.R =========================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 5 ] Done!
> test_file("testthat/test_TGIFFunctions.R")
== Testing test_TGIFFunctions.R ================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 3 ] Done!
> test_file("testthat/test_convertRowID.R")
== Testing test_convertRowID.R =================================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
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-- Failure (test_convertRowID.R:48:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_convertRowID.R:51:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:53:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean")
at test_convertRowID.R:53:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:54:1): (code run outside of `test_that()`) -----
identical(rownames(out$output), c("3", "2", "4", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:56:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.var")
at test_convertRowID.R:56:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Warning (test_convertRowID.R:59:1): (code run outside of `test_that()`) -----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2")
at test_convertRowID.R:59:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:112:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Failure (test_convertRowID.R:115:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:117:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.mean")
at test_convertRowID.R:117:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Failure (test_convertRowID.R:118:1): (code run outside of `test_that()`) ----
identical(rownames(out$output), c("5", "2", "7")) is not TRUE
`actual`: FALSE
`expected`: TRUE
-- Warning (test_convertRowID.R:120:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.var")
at test_convertRowID.R:120:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
-- Warning (test_convertRowID.R:123:1): (code run outside of `test_that()`) ----
number of items to replace is not a multiple of replacement length
Backtrace:
1. scTGIF::convertRowID(input, rowID, LtoR, "large.cv2")
at test_convertRowID.R:123:0
2. scTGIF f(input, rowID, LtoR, score, unique.right)
3. igraph::`E<-`(`*tmp*`, value = `*vtmp*`)
4. igraph:::i_set_edge_attr(...)
[ FAIL 6 | WARN 6 | SKIP 0 | PASS 14 ]
> test_file("testthat/test_cellMarkerToGmt.R")
== Testing test_cellMarkerToGmt.R ==============================================
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 3 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 0 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 1 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 2 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 3 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 4 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 5 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 6 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 7 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 8 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 9 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 10 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 11 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 12 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 13 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 14 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 15 ]
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ]
-- Warning (test_cellMarkerToGmt.R:134:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Meniscus
Backtrace:
1. GSEABase::getGmt(outfile2_1)
at test_cellMarkerToGmt.R:134:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:135:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Meniscus
Backtrace:
1. GSEABase::getGmt(outfile2_2)
at test_cellMarkerToGmt.R:135:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:140:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Pancreas
Backtrace:
1. GSEABase::getGmt(outfile3_1)
at test_cellMarkerToGmt.R:140:0
2. GSEABase:::.warningf(...)
-- Warning (test_cellMarkerToGmt.R:141:1): (code run outside of `test_that()`) --
1 record(s) contain duplicate ids: Pancreas
Backtrace:
1. GSEABase::getGmt(outfile3_2)
at test_cellMarkerToGmt.R:141:0
2. GSEABase:::.warningf(...)
[ FAIL 0 | WARN 4 | SKIP 0 | PASS 16 ]
>
> proc.time()
user system elapsed
16.46 0.85 17.36
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scTGIF.Rcheck/examples_i386/scTGIF-Ex.timings
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scTGIF.Rcheck/examples_x64/scTGIF-Ex.timings
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