Mike Smith
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/rhdf5 |
| git_branch: RELEASE_3_14 |
| git_last_commit: 1a5587e |
| git_last_commit_date: 2022-03-09 08:07:18 -0400 (Wed, 09 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:13 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rhdf5 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1598/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.38.1 (landing page) Mike Smith
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rhdf5 |
| Version: 2.38.1 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rhdf5.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings rhdf5_2.38.1.tar.gz |
| StartedAt: 2022-04-13 01:40:09 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 01:42:28 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 139.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rhdf5.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rhdf5.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings rhdf5_2.38.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rhdf5/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'rhdf5' version '2.38.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rhdf5' can be installed ... OK
* checking installed package size ... NOTE
installed size is 16.6Mb
sub-directories of 1Mb or more:
libs 14.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/rhdf5/libs/i386/rhdf5.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/rhdf5/libs/x64/rhdf5.dll':
Found '_exit', possibly from '_exit' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.Rcheck/00check.log'
for details.
rhdf5.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rhdf5_2.38.1.tar.gz && rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rhdf5.buildbin-libdir rhdf5_2.38.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rhdf5_2.38.1.zip && rm rhdf5_2.38.1.tar.gz rhdf5_2.38.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 387k 100 387k 0 0 592k 0 --:--:-- --:--:-- --:--:-- 592k
100 387k 100 387k 0 0 592k 0 --:--:-- --:--:-- --:--:-- 592k
install for i386
* installing *source* package 'rhdf5' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bit64conversion.c -o bit64conversion.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/library/Rhdf5lib/lib/i386 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rhdf5'
finding HTML links ... done
H5Aclose html
H5Acreate html
H5Adelete html
H5Aexists html
H5Aget_name html
H5Aget_space html
H5Aget_type html
H5Aopen html
H5Aread html
H5Awrite html
H5Dchunk_dims html
H5Dclose html
H5Dcreate html
H5Dget_create_plist html
H5Dget_space html
H5Dget_storage_size html
H5Dget_type html
H5Dopen html
H5Dread html
H5Dset_extent html
H5Dwrite html
H5Fclose html
H5Fcreate html
H5Fflush html
H5Fget_filesize html
H5Fget_name html
H5Fget_plist html
H5Fis_hdf5 html
H5Fopen html
H5Gclose html
H5Gcreate html
H5Gcreate_anon html
H5Gget_info html
H5Gopen html
H5IdComponent-class html
H5Iget_name html
H5Iget_type html
H5Iis_valid html
H5Lcopy html
H5Lcreate_external html
H5Ldelete html
H5Lexists html
H5Lget_info html
H5Lmove html
H5Oclose html
H5Oget_num_attrs html
H5Olink html
H5Oopen html
H5P_chunk html
H5P_chunk_cache html
H5P_fill_time html
H5P_fill_value html
H5P_istore_k html
H5P_layout html
H5P_libver_bounds html
H5P_shared_mesg_nindexes html
H5P_shared_mesg_phase_change html
H5P_sizes html
H5P_sym_k html
H5P_userblock html
H5Pclose html
H5Pcopy html
H5Pcreate html
H5Pfill_value_defined html
H5Pget_class html
H5Pget_version html
H5Pobject_track_times html
H5Pset_blosc html
H5Pset_bzip2 html
H5Pset_deflate html
H5Pset_fapl_ros3 html
H5Pset_lzf html
H5Pset_shuffle html
H5Pset_szip html
H5Pshared_mesg_index html
H5Sclose html
H5Scombine_hyperslab html
H5Scombine_select html
H5Scopy html
H5Screate html
H5Screate_simple html
H5Sget_select_npoints html
H5Sget_simple_extent_dims html
H5Sis_simple html
H5Sselect_all html
H5Sselect_hyperslab html
H5Sselect_index html
H5Sselect_none html
H5Sselect_valid html
H5Sset_extent_simple html
H5Sunlimited html
H5T_cset html
H5T_size html
H5T_strpad html
H5Tcopy html
H5Tis_variable_str html
H5Zfilter_avail html
H5functions html
h5_FileLocking html
h5_createAttribute html
h5_createDataset html
h5_createFile html
h5_createGroup html
h5_delete html
h5_deleteAttribute html
h5_dump html
h5_errorHandling html
h5_read html
h5_readAttributes html
h5_save html
h5_set_extent html
h5_write html
h5_writeAttribute html
h5checkFilters html
h5closeAll html
h5constants html
h5listObjects html
h5ls html
h5version html
rhdf5 html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rhdf5' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bit64conversion.c -o bit64conversion.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" "-w" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/rhdf5.buildbin-libdir/rhdf5/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rhdf5' as rhdf5_2.38.1.zip
* DONE (rhdf5)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'rhdf5' successfully unpacked and MD5 sums checked
|
rhdf5.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rhdf5)
>
> test_check("rhdf5")
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 920 ]
== Skipped tests ===============================================================
* On CRAN (2)
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 920 ]
>
> proc.time()
user system elapsed
8.17 0.57 9.37
|
rhdf5.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rhdf5)
>
> test_check("rhdf5")
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 923 ]
== Skipped tests ===============================================================
* On CRAN (2)
[ FAIL 0 | WARN 0 | SKIP 2 | PASS 923 ]
>
> proc.time()
user system elapsed
7.62 2.28 10.03
|
|
rhdf5.Rcheck/examples_i386/rhdf5-Ex.timings
|
rhdf5.Rcheck/examples_x64/rhdf5-Ex.timings
|