Brian Schilder
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/orthogene |
| git_branch: RELEASE_3_14 |
| git_last_commit: be43cf5 |
| git_last_commit_date: 2022-04-08 07:13:46 -0400 (Fri, 08 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:02 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the orthogene package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/orthogene.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1352/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| orthogene 1.0.2 (landing page) Brian Schilder
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: orthogene |
| Version: 1.0.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/orthogene_1.0.2.tar.gz && rm -rf orthogene.buildbin-libdir && mkdir orthogene.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=orthogene.buildbin-libdir orthogene_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL orthogene_1.0.2.zip && rm orthogene_1.0.2.tar.gz orthogene_1.0.2.zip |
| StartedAt: 2022-04-12 07:33:39 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:34:49 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 69.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/orthogene_1.0.2.tar.gz && rm -rf orthogene.buildbin-libdir && mkdir orthogene.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=orthogene.buildbin-libdir orthogene_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL orthogene_1.0.2.zip && rm orthogene_1.0.2.tar.gz orthogene_1.0.2.zip
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install for i386
* installing *source* package 'orthogene' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'orthogene'
finding HTML links ... done
add_synonyms html
aggregate_mapped_genes html
aggregate_rows html
all_genes html
all_genes_babelgene html
check_gene_df_type html
convert_orthologs html
create_background html
exp_mouse html
exp_mouse_enst html
get_orgdb_genomeinfodbdata html
gprofiler_orgs html
infer_species html
invert_dictionary html
map_genes html
map_orthologs html
map_orthologs_babelgene html
map_orthologs_gprofiler html
map_orthologs_homologene html
map_species html
message_parallel html
orthogene-package html
plot_benchmark_bar html
plot_benchmark_scatter html
report_orthologs html
run_benchmark html
taxa_id_dict html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'orthogene' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'orthogene' as orthogene_1.0.2.zip
* DONE (orthogene)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'orthogene' successfully unpacked and MD5 sums checked