Maciej Migdał
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/midasHLA |
| git_branch: RELEASE_3_14 |
| git_last_commit: 811d9d5 |
| git_last_commit_date: 2021-10-26 13:07:22 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:53 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the midasHLA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/midasHLA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1148/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| midasHLA 1.2.0 (landing page) Maciej Migdał
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: midasHLA |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/midasHLA_1.2.0.tar.gz && rm -rf midasHLA.buildbin-libdir && mkdir midasHLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=midasHLA.buildbin-libdir midasHLA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL midasHLA_1.2.0.zip && rm midasHLA_1.2.0.tar.gz midasHLA_1.2.0.zip |
| StartedAt: 2022-04-12 07:00:32 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:03:46 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 193.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/midasHLA_1.2.0.tar.gz && rm -rf midasHLA.buildbin-libdir && mkdir midasHLA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=midasHLA.buildbin-libdir midasHLA_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL midasHLA_1.2.0.zip && rm midasHLA_1.2.0.tar.gz midasHLA_1.2.0.zip
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install for i386
* installing *source* package 'midasHLA' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'midasHLA'
finding HTML links ... done
HWETest html
LRTest html
MiDAS-class html
finding level-2 HTML links ... done
MiDAS_tut_HLA html
MiDAS_tut_KIR html
MiDAS_tut_object html
MiDAS_tut_pheno html
aaVariationToCounts html
adjustPValues html
allele_frequencies html
analyzeAssociations html
analyzeConditionalAssociations html
applyInheritanceModel html
as.data.frame.MiDAS html
backquote html
characterMatches html
checkAlleleFormat html
checkColDataFormat html
checkHlaCallsFormat html
checkKirCallsFormat html
checkKirGenesFormat html
checkStatisticalModel html
colnamesMatches html
convertAlleleToVariable html
countsToVariables html
dfToExperimentMat html
dict_dist_grantham html
distGrantham html
experimentMatToDf html
filterByFrequency html
filterByOmnibusGroups html
filterByVariables html
filterExperimentByFrequency html
filterExperimentByVariables html
filterListByElements html
formatResults html
getAAFrequencies html
getAlleleResolution html
getAllelesForAA html
getExperimentFrequencies html
getExperimentPopulationMultiplicator html
getExperiments html
getFrequencies html
getFrequencyMask html
getHlaCalls html
getHlaCallsGenes html
getHlaFrequencies html
getHlaKirInteractions html
getKIRFrequencies html
getKirCalls html
getObjectDetails html
getOmnibusGroups html
getPlaceholder html
getReferenceFrequencies html
getVariableAAPos html
hasTidyMethod html
hlaAlignmentGrantham html
hlaCallsGranthamDistance html
hlaCallsToCounts html
hlaToAAVariation html
hlaToVariable html
isCharacterOrNULL html
isClass html
isClassOrNULL html
isCountOrNULL html
isCountsOrZeros html
isExperimentCountsOrZeros html
isExperimentInheritanceModelApplicable
html
isFlagOrNULL html
isNumberOrNULL html
isStringOrNULL html
isTRUEorFALSE html
iterativeLRT html
iterativeModel html
kableResults html
kir_frequencies html
lapply_tryCatch html
listMiDASDictionaries html
midasToWide html
objectHasPlaceholder html
omnibusTest html
prepareMiDAS html
prepareMiDAS_hla_NK_ligands html
prepareMiDAS_hla_aa html
prepareMiDAS_hla_alleles html
prepareMiDAS_hla_custom html
prepareMiDAS_hla_divergence html
prepareMiDAS_hla_g_groups html
prepareMiDAS_hla_het html
prepareMiDAS_hla_kir_interactions html
prepareMiDAS_hla_supertypes html
prepareMiDAS_kir_custom html
prepareMiDAS_kir_genes html
prepareMiDAS_kir_haplotypes html
readHlaAlignments html
readHlaCalls html
readKirCalls html
reduceAlleleResolution html
reduceHlaCalls html
runMiDAS html
runMiDASGetVarsFreq html
stringMatches html
summariseAAPosition html
updateModel html
validateFrequencyCutoffs html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'midasHLA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'midasHLA' as midasHLA_1.2.0.zip
* DONE (midasHLA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'midasHLA' successfully unpacked and MD5 sums checked