Diogo F.T. Veiga
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/maser |
| git_branch: RELEASE_3_14 |
| git_last_commit: b243c41 |
| git_last_commit_date: 2022-02-08 08:12:28 -0400 (Tue, 08 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the maser package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maser.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1049/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| maser 1.12.1 (landing page) Diogo F.T. Veiga
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: maser |
| Version: 1.12.1 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:maser.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings maser_1.12.1.tar.gz |
| StartedAt: 2022-04-12 22:15:16 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 22:23:10 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 474.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: maser.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:maser.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings maser_1.12.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/maser.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maser/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maser' version '1.12.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'maser' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
availableFeaturesUniprotKB: no visible global function definition for
'read.csv'
availableFeaturesUniprotKB: no visible binding for global variable
'Category'
availableFeaturesUniprotKB: no visible binding for global variable
'Name'
filterByIds: no visible binding for global variable 'ID'
mapTranscriptsA3SSevent: no visible global function definition for
'subjectHits'
mapTranscriptsA5SSevent: no visible global function definition for
'subjectHits'
mapTranscriptsMXEevent: no visible global function definition for
'subjectHits'
mapTranscriptsRIevent: no visible global function definition for
'subjectHits'
mapTranscriptsSEevent: no visible global function definition for
'subjectHits'
overlappingFeatures: no visible global function definition for
'subjectHits'
urlTracksUniprotKB: no visible global function definition for
'read.csv'
Undefined global functions or variables:
Category ID Name read.csv subjectHits
Consider adding
importFrom("utils", "read.csv")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotTranscripts 6.96 0.03 6.98
plotUniprotKBFeatures 6.11 0.05 7.00
mapProteinFeaturesToEvents 4.96 0.09 6.04
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotUniprotKBFeatures 7.16 0.04 8.12
plotTranscripts 7.02 0.03 7.05
mapProteinFeaturesToEvents 5.44 0.07 6.71
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/maser.Rcheck/00check.log'
for details.
maser.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/maser_1.12.1.tar.gz && rm -rf maser.buildbin-libdir && mkdir maser.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maser.buildbin-libdir maser_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL maser_1.12.1.zip && rm maser_1.12.1.tar.gz maser_1.12.1.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
25 1488k 25 374k 0 0 834k 0 0:00:01 --:--:-- 0:00:01 833k
100 1488k 100 1488k 0 0 1291k 0 0:00:01 0:00:01 --:--:-- 1292k
install for i386
* installing *source* package 'maser' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'maser'
finding HTML links ... done
Maser-class html
PSI-Maser-character-method html
PSI html
annotation-Maser-method html
availableFeaturesUniprotKB html
boxplot_PSI_levels html
counts-Maser-method html
display html
dotplot html
filterByCoverage html
filterByEventId html
geneEvents html
granges-Maser-method html
mapProteinFeaturesToEvents html
mapTranscriptsToEvents html
maser html
pca html
plotGenePSI html
plotTranscripts html
plotUniprotKBFeatures html
splicingDistribution html
summary-Maser-method html
topEvents html
volcano html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'maser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'maser' as maser_1.12.1.zip
* DONE (maser)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'maser' successfully unpacked and MD5 sums checked
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maser.Rcheck/examples_i386/maser-Ex.timings
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maser.Rcheck/examples_x64/maser-Ex.timings
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