Multiple platform build/check report for BioC 3.14 - CHECK results for graper on machv2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.4 LTS)	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4324
tokay2	Windows Server 2012 R2 Standard	x64	4.1.3 (2022-03-10) -- "One Push-Up"	4077
machv2	macOS 10.14.6 Mojave	x86_64	4.1.3 (2022-03-10) -- "One Push-Up"	4137
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.10.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.10.0.tar.gz

StartedAt: 2022-04-12 14:02:05 -0400 (Tue, 12 Apr 2022)

EndedAt: 2022-04-12 14:03:37 -0400 (Tue, 12 Apr 2022)

EllapsedTime: 91.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/graper.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c fit_graper.cpp -o fit_graper.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-871.143
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-588.681
ELB improved by 282.462

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-528.535
ELB improved by 60.1452

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-482.335
ELB improved by 46.2003

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.83
ELB improved by 22.5054

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.251
ELB improved by 8.57867

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.786
ELB improved by 4.46484

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.331
ELB improved by 3.45577

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.095
ELB improved by 3.23594

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.78
ELB improved by 3.315

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.248
ELB improved by 3.53199

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.491
ELB improved by 3.75659

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.689
ELB improved by 3.80193

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.203
ELB improved by 3.48583

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.386
ELB improved by 2.81768

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.343
ELB improved by 2.04249

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.927
ELB improved by 1.41597

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.901
ELB improved by 1.02657

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.067
ELB improved by 0.833225

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.299
ELB improved by 0.767881

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.516
ELB improved by 0.783695

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.659
ELB improved by 0.857151

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.682
ELB improved by 0.97636

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.557
ELB improved by 1.1255

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.286
ELB improved by 1.27056

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.915
ELB improved by 1.37114

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.498
ELB improved by 1.4169

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.074
ELB improved by 1.42379

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.672
ELB improved by 1.40273

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.317
ELB improved by 1.3543

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.04
ELB improved by 1.27705

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.865
ELB improved by 1.17497

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.804
ELB improved by 1.06167

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.847
ELB improved by 0.956396

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.975
ELB improved by 0.872328

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.165
ELB improved by 0.809547

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.404
ELB improved by 0.761022

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.682
ELB improved by 0.722559

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.982
ELB improved by 0.699821

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.282
ELB improved by 0.699939

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.599
ELB improved by 0.683398

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.032
ELB improved by 0.56687

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.655
ELB improved by 0.376669

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.431
ELB improved by 0.224579

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.292
ELB improved by 0.138282

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.199
ELB improved by 0.0927983

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.132
ELB improved by 0.0674097

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.08
ELB improved by 0.0519396

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.038
ELB improved by 0.0417671

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.004
ELB improved by 0.034678

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.974
ELB improved by 0.0295157

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.948
ELB improved by 0.0256268

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.926
ELB improved by 0.0226178

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.906
ELB improved by 0.0202383

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.887
ELB improved by 0.0183212

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.871
ELB improved by 0.0167487

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.855
ELB improved by 0.0154338

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.841
ELB improved by 0.0143083

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.828
ELB improved by 0.0133164

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.815
ELB improved by 0.0124119

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.804
ELB improved by 0.0115575

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.793
ELB improved by 0.0107258

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.783
ELB improved by 0.00990055

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-859.415
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-569.152
ELB improved by 290.263

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-509.211
ELB improved by 59.9409

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.952
ELB improved by 37.2586

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.291
ELB improved by 16.6612

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.59
ELB improved by 6.70072

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.661
ELB improved by 3.92919

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.594
ELB improved by 3.06727

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.917
ELB improved by 2.6764

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.49
ELB improved by 2.4275

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.291
ELB improved by 2.1988

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.335
ELB improved by 1.95554

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.64
ELB improved by 1.69518

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.212
ELB improved by 1.42791

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.042
ELB improved by 1.17084

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.1
ELB improved by 0.941841

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.348
ELB improved by 0.751994

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.745
ELB improved by 0.602565

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.257
ELB improved by 0.487904

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.857
ELB improved by 0.40028

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.524
ELB improved by 0.332966

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.243
ELB improved by 0.281007

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.002
ELB improved by 0.240802

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.793
ELB improved by 0.209557

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.608
ELB improved by 0.184991

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.442
ELB improved by 0.165253

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.293
ELB improved by 0.148916

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.159
ELB improved by 0.134962

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.036
ELB improved by 0.122731

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.924
ELB improved by 0.111841

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.822
ELB improved by 0.1021

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.728
ELB improved by 0.0934151

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.643
ELB improved by 0.0857328

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.564
ELB improved by 0.0790042

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.491
ELB improved by 0.0731713

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.422
ELB improved by 0.0681679

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.358
ELB improved by 0.0639266

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.298
ELB improved by 0.0603845

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.241
ELB improved by 0.0574882

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.185
ELB improved by 0.055197

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.132
ELB improved by 0.0534835

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.08
ELB improved by 0.0523343

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.028
ELB improved by 0.0517506

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.976
ELB improved by 0.0517487

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.924
ELB improved by 0.0523607

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.87
ELB improved by 0.0536363

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.814
ELB improved by 0.0556446

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.756
ELB improved by 0.0584772

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.694
ELB improved by 0.0622514

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.627
ELB improved by 0.0671144

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.553
ELB improved by 0.0732486

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.472
ELB improved by 0.0808769

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.382
ELB improved by 0.0902697

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.28
ELB improved by 0.101753

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.165
ELB improved by 0.115715

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.032
ELB improved by 0.132623

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.879
ELB improved by 0.153028

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.701
ELB improved by 0.177586

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.494
ELB improved by 0.207061

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.252
ELB improved by 0.242329

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.968
ELB improved by 0.284338

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.634
ELB improved by 0.334012

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.242
ELB improved by 0.392056

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.783
ELB improved by 0.458617

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.25
ELB improved by 0.532813

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.638
ELB improved by 0.612234

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.945
ELB improved by 0.692675

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.177
ELB improved by 0.768516

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.343
ELB improved by 0.833811

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.46
ELB improved by 0.882809

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.554
ELB improved by 0.906666

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.665
ELB improved by 0.888556

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.85
ELB improved by 0.815323

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.149
ELB improved by 0.700978

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.572
ELB improved by 0.576519

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.109
ELB improved by 0.463543

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.739
ELB improved by 0.369904

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.443
ELB improved by 0.295795

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.205
ELB improved by 0.238305

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.011
ELB improved by 0.193835

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.852
ELB improved by 0.159201

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.72
ELB improved by 0.131934

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.609
ELB improved by 0.110219

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.517
ELB improved by 0.092737

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.438
ELB improved by 0.0785279

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.371
ELB improved by 0.0668806

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.314
ELB improved by 0.0572619

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.265
ELB improved by 0.0492659

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.222
ELB improved by 0.0425797

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.185
ELB improved by 0.0369591

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.153
ELB improved by 0.0322116

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.125
ELB improved by 0.0281838

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.1
ELB improved by 0.0247525

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.078
ELB improved by 0.0218181

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.059
ELB improved by 0.0192995

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.042
ELB improved by 0.0171303

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.027
ELB improved by 0.0152557

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.013
ELB improved by 0.0136307

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.001
ELB improved by 0.0122176

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.99
ELB improved by 0.0109852

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.98
ELB improved by 0.00990742

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-883.131
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-601.799
ELB improved by 281.332

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-539.008
ELB improved by 62.7911

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-491.053
ELB improved by 47.9542

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.705
ELB improved by 25.3481

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.754
ELB improved by 9.95107

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.923
ELB improved by 4.83091

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.634
ELB improved by 3.28927

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.882
ELB improved by 2.75184

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.191
ELB improved by 2.69171

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.333
ELB improved by 2.85776

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.262
ELB improved by 3.07125

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.126
ELB improved by 3.13587

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.248
ELB improved by 2.87777

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.942
ELB improved by 2.30564

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.306
ELB improved by 1.63585

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.226
ELB improved by 1.08073

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.521
ELB improved by 0.704455

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.049
ELB improved by 0.472043

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.718
ELB improved by 0.331244

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.474
ELB improved by 0.24407

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.286
ELB improved by 0.187958

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.136
ELB improved by 0.150268

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.012
ELB improved by 0.123894

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.907
ELB improved by 0.10473

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.817
ELB improved by 0.090326

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.738
ELB improved by 0.0791696

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.667
ELB improved by 0.0702982

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.604
ELB improved by 0.0630809

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.547
ELB improved by 0.0570925

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.495
ELB improved by 0.0520398

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.447
ELB improved by 0.0477155

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.403
ELB improved by 0.0439699

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.363
ELB improved by 0.0406927

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.325
ELB improved by 0.0378008

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.29
ELB improved by 0.0352308

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.257
ELB improved by 0.0329328

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.226
ELB improved by 0.0308676

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.197
ELB improved by 0.0290031

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.169
ELB improved by 0.0273135

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.144
ELB improved by 0.0257771

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.119
ELB improved by 0.0243758

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.096
ELB improved by 0.0230943

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.074
ELB improved by 0.0219194

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.053
ELB improved by 0.0208398

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.034
ELB improved by 0.0198456

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.015
ELB improved by 0.0189282

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.997
ELB improved by 0.0180801

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.979
ELB improved by 0.0172947

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.963
ELB improved by 0.0165659

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.947
ELB improved by 0.0158885

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.932
ELB improved by 0.0152579

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.917
ELB improved by 0.0146698

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.903
ELB improved by 0.0141204

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.889
ELB improved by 0.0136063

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.876
ELB improved by 0.0131245

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.863
ELB improved by 0.0126722

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.851
ELB improved by 0.0122469

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.839
ELB improved by 0.0118462

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.828
ELB improved by 0.0114682

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.817
ELB improved by 0.011111

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.806
ELB improved by 0.0107728

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.796
ELB improved by 0.0104522

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.785
ELB improved by 0.0101477

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.776
ELB improved by 0.00985794

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-858.135
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.133
ELB improved by 300.002

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-496.484
ELB improved by 61.6483

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.545
ELB improved by 36.9394

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.942
ELB improved by 13.6035

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.163
ELB improved by 4.77805

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.565
ELB improved by 2.59894

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.752
ELB improved by 1.81241

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.324
ELB improved by 1.42789

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.118
ELB improved by 1.20577

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.069
ELB improved by 1.04977

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.145
ELB improved by 0.923513

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.331
ELB improved by 0.814294

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.613
ELB improved by 0.7182

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.979
ELB improved by 0.634087

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.417
ELB improved by 0.561342

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.918
ELB improved by 0.499213

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.471
ELB improved by 0.44672

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.069
ELB improved by 0.402727

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.703
ELB improved by 0.366043

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.367
ELB improved by 0.335496

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.057
ELB improved by 0.309973

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.769
ELB improved by 0.288446

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.499
ELB improved by 0.270001

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.245
ELB improved by 0.253861

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.005
ELB improved by 0.23943

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.779
ELB improved by 0.226329

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.565
ELB improved by 0.214416

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.361
ELB improved by 0.203784

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.166
ELB improved by 0.194715

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.978
ELB improved by 0.187627

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.795
ELB improved by 0.182992

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.614
ELB improved by 0.181283

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.431
ELB improved by 0.182936

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.243
ELB improved by 0.188347

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.045
ELB improved by 0.197897

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.833
ELB improved by 0.211992

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.602
ELB improved by 0.231118

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.346
ELB improved by 0.255893

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.059
ELB improved by 0.287119

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.733
ELB improved by 0.325816

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.36
ELB improved by 0.373213

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.929
ELB improved by 0.430661

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.43
ELB improved by 0.499406

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.85
ELB improved by 0.580182

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.177
ELB improved by 0.672671

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.402
ELB improved by 0.775044

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.518
ELB improved by 0.883868

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.524
ELB improved by 0.994399

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.423
ELB improved by 1.10082

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.227
ELB improved by 1.19586

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.961
ELB improved by 1.26547

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.697
ELB improved by 1.26438

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.569
ELB improved by 1.12784

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.676
ELB improved by 0.89363

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.01
ELB improved by 0.666054

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.52
ELB improved by 0.489461

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.159
ELB improved by 0.361261

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.889
ELB improved by 0.269839

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.683
ELB improved by 0.20579

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.521
ELB improved by 0.161949

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.389
ELB improved by 0.132436

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.276
ELB improved by 0.11246

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.178
ELB improved by 0.0983155

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.091
ELB improved by 0.0873204

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.013
ELB improved by 0.0777732

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.944
ELB improved by 0.0689145

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.883
ELB improved by 0.0607091

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.83
ELB improved by 0.0534226

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.783
ELB improved by 0.0472394

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.741
ELB improved by 0.0421324

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.703
ELB improved by 0.0379325

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.668
ELB improved by 0.0344368

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.637
ELB improved by 0.031471

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.608
ELB improved by 0.028906

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.581
ELB improved by 0.0266513

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.557
ELB improved by 0.0246445

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.534
ELB improved by 0.0228415

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.512
ELB improved by 0.0212101

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.493
ELB improved by 0.0197259

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.474
ELB improved by 0.0183696

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.457
ELB improved by 0.0171259

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.441
ELB improved by 0.0159822

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.426
ELB improved by 0.014928

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.412
ELB improved by 0.0139549

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.399
ELB improved by 0.0130556

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.387
ELB improved by 0.0122244

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.376
ELB improved by 0.011456

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.365
ELB improved by 0.010746

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.355
ELB improved by 0.0100905

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.345
ELB improved by 0.00948583

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  3.660   0.294   3.936

name	user	system	elapsed
coef.graper	0.079	0.028	0.109
getPIPs	0.060	0.020	0.081
graper	0.094	0.026	0.120
makeExampleData	0.017	0.002	0.019
makeExampleDataWithUnequalGroups	0.014	0.002	0.016
plotELBO	0.316	0.043	0.360
plotGroupPenalties	0.932	0.020	0.954
plotPosterior	1.109	0.031	1.140
predict.graper	2.726	0.149	2.970
print.graper	0.072	0.028	0.100

CHECK results for graper on machv2

Summary

Command output

Installation output

Tests output

Example timings