Jiefei Wang
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/gpuMagic |
| git_branch: RELEASE_3_14 |
| git_last_commit: d9b9915 |
| git_last_commit_date: 2021-10-26 12:51:37 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:40 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gpuMagic package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 814/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gpuMagic 1.10.0 (landing page) Jiefei Wang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: gpuMagic |
| Version: 1.10.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gpuMagic_1.10.0.tar.gz && rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpuMagic.buildbin-libdir gpuMagic_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gpuMagic_1.10.0.zip && rm gpuMagic_1.10.0.tar.gz gpuMagic_1.10.0.zip |
| StartedAt: 2022-04-12 04:40:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:44:54 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 275.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gpuMagic_1.10.0.tar.gz && rm -rf gpuMagic.buildbin-libdir && mkdir gpuMagic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gpuMagic.buildbin-libdir gpuMagic_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gpuMagic_1.10.0.zip && rm gpuMagic_1.10.0.tar.gz gpuMagic_1.10.0.zip
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install for i386
* installing *source* package 'gpuMagic' ...
** using staged installation
** libs
entered
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_Interface.cpp -o C_Interface.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_functionRegistration.cpp -o R_functionRegistration.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Tools.cpp -o Tools.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kernelManager.cpp -o kernelManager.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c openArray.cpp -o openArray.o
cd ./ICD_loader && mkdir -p ./i386 && /usr/bin/make ./i386/libOpenCL.a \
CC=""C:/rtools40/mingw32/bin/"gcc " CFLAGS=" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign " AR=""C:/rtools40/mingw32/bin/"ar" RM="rm -f" OPENCL_INC="../../inst/include/OpenCL_header" \
ICD_OS=icd_windows
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmYwa90/R.INSTALLed07a6c5b/gpuMagic/src/ICD_loader'
C:/rtools40/mingw32/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd.c -o i386/icd.o
C:/rtools40/mingw32/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd_dispatch.c -o i386/icd_dispatch.o
C:/rtools40/mingw32/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd_windows.c -o i386/icd_windows.o
rm -f i386/libOpenCL.a
C:/rtools40/mingw32/bin/ar rcs i386/libOpenCL.a i386/icd.o i386/icd_dispatch.o i386/icd_windows.o
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpmYwa90/R.INSTALLed07a6c5b/gpuMagic/src/ICD_loader'
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o ./ICD_loader/i386/libOpenCL.a -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/gpuMagic.buildbin-libdir/00LOCK-gpuMagic/00new/gpuMagic/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'gpuMagic'
finding HTML links ... done
DeviceInfo html
Matrix html
Scalar html
as.matrix.gpuMatrix html
as.vector.gpuMatrix html
compileGPUCode html
dot-kernel html
extract-methods html
gpuMagic.getAvailableType html
gpuMagic.getMemUsage html
gpuMagic.getOptions html
gpuMagic.setOptions html
gpuMatrix html
gpuSapply html
gpuSapply.getOption html
internalFunctions html
kernel.getOption html
ncol-gpuMatrix-method html
no_copy_method html
printFunctions html
subRef html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No device has been found, please make sure the computer has a graphic card or the driver has been properly installed.
Hint:
For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively.
For GPU, you need to download the graphic driver from your vendor's website.
** testing if installed package can be loaded from final location
No device has been found, please make sure the computer has a graphic card or the driver has been properly installed.
Hint:
For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively.
For GPU, you need to download the graphic driver from your vendor's website.
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'gpuMagic' ...
** libs
entered
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_Interface.cpp -o C_Interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_functionRegistration.cpp -o R_functionRegistration.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Tools.cpp -o Tools.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c kernelManager.cpp -o kernelManager.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -IC:/Users/BIOCBU~1/BBS-3~1.14-/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c openArray.cpp -o openArray.o
cd ./ICD_loader && mkdir -p ./x64 && /usr/bin/make ./x64/libOpenCL.a \
CC=""C:/rtools40/mingw64/bin/"gcc " CFLAGS=" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign " AR=""C:/rtools40/mingw64/bin/"ar" RM="rm -f" OPENCL_INC="../../inst/include/OpenCL_header" \
ICD_OS=icd_windows
make[1]: Entering directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpEDduo2/R.INSTALLf703c2119ba/gpuMagic/src/ICD_loader'
C:/rtools40/mingw64/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd.c -o x64/icd.o
C:/rtools40/mingw64/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd_dispatch.c -o x64/icd_dispatch.o
C:/rtools40/mingw64/bin/gcc -I../../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c icd_windows.c -o x64/icd_windows.o
rm -f x64/libOpenCL.a
C:/rtools40/mingw64/bin/ar rcs x64/libOpenCL.a x64/icd.o x64/icd_dispatch.o x64/icd_windows.o
make[1]: Leaving directory '/c/Users/biocbuild/bbs-3.14-bioc/tmpdir/RtmpEDduo2/R.INSTALLf703c2119ba/gpuMagic/src/ICD_loader'
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o ./ICD_loader/x64/libOpenCL.a -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/gpuMagic.buildbin-libdir/gpuMagic/libs/x64
** testing if installed package can be loaded
No device has been found, please make sure the computer has a graphic card or the driver has been properly installed.
Hint:
For CPU, you can install the intel's / ATI's graphic driver for the intel's / AMD's CPU respectively.
For GPU, you need to download the graphic driver from your vendor's website.
* MD5 sums
packaged installation of 'gpuMagic' as gpuMagic_1.10.0.zip
* DONE (gpuMagic)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'gpuMagic' successfully unpacked and MD5 sums checked