Pierre Khoueiry
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: RELEASE_3_14 |
| git_last_commit: d81e849 |
| git_last_commit_date: 2021-10-26 12:53:32 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:32 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fcScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 632/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.8.0 (landing page) Pierre Khoueiry
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fcScan |
| Version: 1.8.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings fcScan_1.8.0.tar.gz |
| StartedAt: 2022-04-12 19:34:28 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 20:04:26 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 1798.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings fcScan_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/fcScan.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getCluster 0.31 0.06 13.67
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getCluster 0.27 0.05 13.23
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fcScan_1.8.0.tar.gz && rm -rf fcScan.buildbin-libdir && mkdir fcScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fcScan.buildbin-libdir fcScan_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fcScan_1.8.0.zip && rm fcScan_1.8.0.tar.gz fcScan_1.8.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
97 17834 97 17341 0 0 83988 0 --:--:-- --:--:-- --:--:-- 84179
100 17834 100 17834 0 0 45065 0 --:--:-- --:--:-- --:--:-- 45035
install for i386
* installing *source* package 'fcScan' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'fcScan'
finding HTML links ... done
getCluster html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'fcScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fcScan' as fcScan_1.8.0.zip
* DONE (fcScan)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fcScan' successfully unpacked and MD5 sums checked
|
fcScan.Rcheck/tests_i386/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.12506 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 11.89071 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.78137 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.85946 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.3282 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.81259 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.20321 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.71883 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.70321 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.18759 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.93758 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.34383 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.04696 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.70321 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 12.06259 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 10.8282 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 12.18762 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.90634 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.12505 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.95322 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.20321 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.90634 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.62511 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.04698 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.53134 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.0782 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.35942 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.39071 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.81258 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.42196 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.75009 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.12512 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.98446 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.18759 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.45317 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.59387 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.65632 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.29697 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.70318 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 10.2657 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.45324 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 20.42202 secs
RUNIT TEST PROTOCOL -- Tue Apr 12 19:48:56 2022
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
18.01 1.50 537.81
|
fcScan.Rcheck/tests_x64/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.62507 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 13.20319 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.15636 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.4845 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.18763 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.23443 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.2501 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.46888 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.46881 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.04698 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.96884 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 11.96884 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.59385 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.7345 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 13.29694 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 12.31259 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 13.70322 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.65635 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.42197 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.92197 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 12.12509 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.35944 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.87509 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.68759 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.31307 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.93765 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 32.78145 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 20.18233 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.1979 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 17.01588 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 49.82311 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 1.746936 mins
17 entries loaded
Running getCluster using 1 threads
Time difference of 18.54704 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 46.2503 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 1.291456 mins
17 entries loaded
Running getCluster using 1 threads
Time difference of 54.03194 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.82696 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 22.6201 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 12.297 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.73227 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.79608 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 11.65752 secs
RUNIT TEST PROTOCOL -- Tue Apr 12 20:04:07 2022
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
19.35 0.85 908.57
|
|
fcScan.Rcheck/examples_i386/fcScan-Ex.timings
|
fcScan.Rcheck/examples_x64/fcScan-Ex.timings
|