Ted Natoli
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/cmapR |
| git_branch: RELEASE_3_14 |
| git_last_commit: a9d9f50 |
| git_last_commit_date: 2021-10-26 12:58:05 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:21 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the cmapR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cmapR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 346/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| cmapR 1.6.0 (landing page) Ted Natoli
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: cmapR |
| Version: 1.6.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cmapR_1.6.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cmapR_1.6.0.zip && rm cmapR_1.6.0.tar.gz cmapR_1.6.0.zip |
| StartedAt: 2022-04-12 05:45:22 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:46:38 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 76.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cmapR_1.6.0.tar.gz && rm -rf cmapR.buildbin-libdir && mkdir cmapR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cmapR.buildbin-libdir cmapR_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cmapR_1.6.0.zip && rm cmapR_1.6.0.tar.gz cmapR_1.6.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
11 3557k 11 403k 0 0 827k 0 0:00:04 --:--:-- 0:00:04 828k
59 3557k 59 2103k 0 0 1414k 0 0:00:02 0:00:01 0:00:01 1413k
100 3557k 100 3557k 0 0 1708k 0 0:00:02 0:00:02 --:--:-- 1709k
install for i386
* installing *source* package 'cmapR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cmapR'
finding HTML links ... done
GCT-class html
GCT html
align_matrices html
annotate_gct html
append_dim html
cdesc_char html
check_colnames html
check_dups html
distil html
ds html
extract_gct html
fix_datatypes html
gene_set html
ids html
is.wholenumber html
kd_gct html
lxb2mat html
mat html
melt_gct html
finding level-2 HTML links ... done
merge_gct html
merge_with_precedence html
meta html
na_pad_matrix html
parse_gctx html
parse_gmt html
parse_gmx html
parse_grp html
process_ids html
rank_gct html
read_gctx_ids html
read_gctx_meta html
robust_zscore html
subset_gct html
subset_to_ids html
threshold html
transpose_gct html
update_gctx html
write_gct html
write_gctx html
write_gctx_meta html
write_gmt html
write_grp html
write_tbl html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cmapR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cmapR' as cmapR_1.6.0.zip
* DONE (cmapR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'cmapR' successfully unpacked and MD5 sums checked