| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:44 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the caOmicsV package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/caOmicsV.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 245/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| caOmicsV 1.24.0 (landing page) Henry Zhang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: caOmicsV |
| Version: 1.24.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:caOmicsV.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings caOmicsV_1.24.0.tar.gz |
| StartedAt: 2022-04-12 11:10:51 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 11:13:10 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 138.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: caOmicsV.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:caOmicsV.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings caOmicsV_1.24.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/caOmicsV.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘caOmicsV/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘caOmicsV’ version ‘1.24.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘caOmicsV’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
bioNetLegend 7.729 0.478 8.229
plotBioNetCircos 7.642 0.419 8.080
plotBioNetHeatmap 5.630 0.254 5.894
drawBioNetNodeBackground 4.755 0.233 5.037
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
caOmicsV.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL caOmicsV ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘caOmicsV’ ... ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caOmicsV)
caOmicsV.Rcheck/caOmicsV-Ex.timings
| name | user | system | elapsed | |
| CA_OMICS_ENV | 0.000 | 0.000 | 0.001 | |
| CA_OMICS_NAME | 0.001 | 0.001 | 0.001 | |
| CA_OMICS_NA_STRING | 0.000 | 0.000 | 0.001 | |
| CNVDemoData | 0.023 | 0.008 | 0.031 | |
| RNA2miRNA | 0.001 | 0.003 | 0.005 | |
| RNASeq | 0.004 | 0.002 | 0.006 | |
| RNASeqDemoData | 0.002 | 0.002 | 0.004 | |
| bioMatrixLegend | 0.196 | 0.031 | 0.226 | |
| bioNetCircosPlot | 1.770 | 0.207 | 1.980 | |
| bioNetLegend | 7.729 | 0.478 | 8.229 | |
| biomatrixPlotDemoData | 0.002 | 0.003 | 0.006 | |
| bionetPlotDemoData | 0.003 | 0.003 | 0.006 | |
| convertToZScores | 0.006 | 0.002 | 0.008 | |
| drawBioNetNodeBackground | 4.755 | 0.233 | 5.037 | |
| eraseBioNetNode | 2.094 | 0.158 | 2.262 | |
| getBezierCurve | 0.000 | 0.001 | 0.001 | |
| getBioMatrixDataRowTop | 0.001 | 0.000 | 0.001 | |
| getBioMatrixPlotParameters | 0.001 | 0.001 | 0.003 | |
| getBioNetNodeLinkLine | 0.001 | 0.001 | 0.001 | |
| getBioNetParameters | 0.406 | 0.059 | 0.466 | |
| getBioNetPlotLocations | 0.370 | 0.026 | 0.396 | |
| getBioNetSamplePlotPosition | 0.001 | 0.001 | 0.000 | |
| getCaOmicsVColors | 0.001 | 0.000 | 0.001 | |
| getCaOmicsVPlotTypes | 0 | 0 | 0 | |
| getDefaultNaStrings | 0.000 | 0.000 | 0.001 | |
| getHeatmapColorScales | 0.001 | 0.000 | 0.001 | |
| getPlotDataSet | 0.020 | 0.011 | 0.030 | |
| getPlotOmicsData | 0.013 | 0.003 | 0.016 | |
| getPlotSampleData | 0.002 | 0.001 | 0.005 | |
| getPlotSummaryData | 0.009 | 0.002 | 0.011 | |
| getRelatedPlotData | 0.089 | 0.004 | 0.094 | |
| initializeBioMatrixPlot | 0.000 | 0.001 | 0.001 | |
| initializeBioNetCircos | 0.361 | 0.041 | 0.403 | |
| labelBioNetNodeNames | 1.924 | 0.119 | 2.060 | |
| linkBioNetNodes | 1.451 | 0.108 | 1.570 | |
| linkBioNetSamples | 1.689 | 0.144 | 1.862 | |
| methylDemoData | 0.003 | 0.002 | 0.005 | |
| miRNA | 0.003 | 0.002 | 0.005 | |
| miRNADemoData | 0.002 | 0.002 | 0.004 | |
| plotBioMatrix | 0.832 | 0.020 | 0.857 | |
| plotBioMatrixBars | 0.016 | 0.001 | 0.019 | |
| plotBioMatrixBinaryData | 0.005 | 0.001 | 0.006 | |
| plotBioMatrixCategoryData | 0.005 | 0.001 | 0.006 | |
| plotBioMatrixHeatmap | 0.008 | 0.003 | 0.011 | |
| plotBioMatrixRowNames | 0.022 | 0.001 | 0.024 | |
| plotBioMatrixSampleData | 0.004 | 0.001 | 0.006 | |
| plotBioMatrixSampleNames | 0.003 | 0.001 | 0.005 | |
| plotBioNetBars | 2.412 | 0.204 | 2.619 | |
| plotBioNetCircos | 7.642 | 0.419 | 8.080 | |
| plotBioNetHeatmap | 5.630 | 0.254 | 5.894 | |
| plotBioNetLines | 3.565 | 0.187 | 3.807 | |
| plotBioNetPoints | 3.510 | 0.167 | 3.685 | |
| plotBioNetPolygons | 3.590 | 0.179 | 3.782 | |
| plotHeatmapColorScale | 1.591 | 0.022 | 1.621 | |
| resetBioNetNodePlotAreaBoundary | 0.001 | 0.000 | 0.001 | |
| sampleDemoData | 0.002 | 0.002 | 0.003 | |
| setBioMatrixBaseCoordinates | 0 | 0 | 0 | |
| setBioMatrixPlotArea | 0.002 | 0.001 | 0.003 | |
| setBioMatrixPlotParameters | 0.000 | 0.000 | 0.001 | |
| setBioNetCircosBasePlotPositions | 0 | 0 | 0 | |
| setBioNetNodeLayout | 0.334 | 0.046 | 0.379 | |
| setBioNetPlotAreaBackground | 0.504 | 0.078 | 0.582 | |
| setBioNetPlotParameters | 0 | 0 | 0 | |
| setCaOmicsVColors | 0 | 0 | 0 | |
| setDefaultNaStrings | 0.001 | 0.001 | 0.000 | |
| showBioMatrixPlotLayout | 0.864 | 0.014 | 0.884 | |
| showBioNetNodesLayout | 0.967 | 0.095 | 1.064 | |
| showSupportedBioNetCircosPlotType | 0.001 | 0.000 | 0.000 | |
| sortClinicalData | 0.002 | 0.003 | 0.005 | |
| sortOmicsDataByColumn | 0.003 | 0.003 | 0.006 | |
| sortOmicsDataByRow | 0.006 | 0.002 | 0.008 | |