| Back to Multiple platform build/check report for BioC 3.14 | 
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This page was generated on 2022-04-13 12:08:51 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 | 
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 | 
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1865/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SPLINTER 1.20.0  (landing page) Diana Low 
 | nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |  | ||||||||
| Package: SPLINTER | 
| Version: 1.20.0 | 
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.20.0.tar.gz | 
| StartedAt: 2022-04-12 18:58:29 -0400 (Tue, 12 Apr 2022) | 
| EndedAt: 2022-04-12 19:06:21 -0400 (Tue, 12 Apr 2022) | 
| EllapsedTime: 471.8 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: SPLINTER.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.20.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/SPLINTER.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SPLINTER/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘SPLINTER’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SPLINTER’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
getPCRsizes 25.542  0.222  25.780
eventPlot   17.071  0.251  17.342
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
| name | user | system | elapsed | |
| acceptor.m | 0.003 | 0.002 | 0.006 | |
| addEnsemblAnnotation | 0.007 | 0.001 | 0.008 | |
| callPrimer3 | 0 | 0 | 0 | |
| checkPrimer | 0.180 | 0.018 | 0.198 | |
| compatible_cds | 0.001 | 0.001 | 0.002 | |
| compatible_tx | 0.002 | 0.001 | 0.003 | |
| donor.m | 0.001 | 0.002 | 0.004 | |
| eventOutcomeCompare | 2.297 | 0.097 | 2.396 | |
| eventOutcomeTranslate | 0.781 | 0.074 | 0.856 | |
| eventPlot | 17.071 | 0.251 | 17.342 | |
| extendROI | 1.484 | 0.037 | 1.521 | |
| extractSpliceEvents | 0.004 | 0.001 | 0.004 | |
| extractSpliceSites | 0.209 | 0.001 | 0.209 | |
| findCompatibleEvents | 0.720 | 0.001 | 0.721 | |
| findCompatibleExon | 0.383 | 0.001 | 0.385 | |
| findTX | 0.049 | 0.001 | 0.050 | |
| getPCRsizes | 25.542 | 0.222 | 25.780 | |
| getRegionDNA | 0.468 | 0.016 | 0.484 | |
| insertRegion | 0.353 | 0.003 | 0.356 | |
| makeROI | 0.588 | 0.002 | 0.589 | |
| makeUniqueIDs | 0.003 | 0.001 | 0.004 | |
| pcr_result1 | 0.002 | 0.001 | 0.002 | |
| plot_seqlogo | 0.064 | 0.003 | 0.066 | |
| primers | 0.001 | 0.001 | 0.002 | |
| psiPlot | 0.401 | 0.009 | 0.412 | |
| region_minus_exon | 0.002 | 0.002 | 0.003 | |
| roi | 0.001 | 0.002 | 0.002 | |
| shapiroAcceptor | 0.714 | 0.022 | 0.740 | |
| shapiroDonor | 0.767 | 0.019 | 0.787 | |
| splice_data | 0.001 | 0.001 | 0.003 | |
| splice_fasta | 0.001 | 0.001 | 0.003 | |
| splitPCRhit | 0.034 | 0.000 | 0.034 | |
| thecds | 0.000 | 0.000 | 0.001 | |
| theexons | 0.002 | 0.001 | 0.003 | |
| valid_cds | 0.002 | 0.002 | 0.003 | |
| valid_tx | 0.001 | 0.001 | 0.002 | |