| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:31 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the PepsNMR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PepsNMR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1395/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PepsNMR 1.12.0 (landing page) Manon Martin
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: PepsNMR |
| Version: 1.12.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.12.0.tar.gz |
| StartedAt: 2022-04-12 16:38:33 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 16:52:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 818.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: PepsNMR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:PepsNMR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings PepsNMR_1.12.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/PepsNMR.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PepsNMR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PepsNMR’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PepsNMR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
PreprocessingChain 335.006 14.233 349.561
PEPSNMR-package 322.110 15.714 338.228
Warping 17.145 1.526 18.686
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
PepsNMR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL PepsNMR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘PepsNMR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PepsNMR)
PepsNMR.Rcheck/PepsNMR-Ex.timings
| name | user | system | elapsed | |
| Apodization | 0.768 | 0.068 | 0.840 | |
| BaselineCorrection | 0.630 | 0.129 | 0.761 | |
| Bucketing | 0.122 | 0.004 | 0.127 | |
| Draw | 1.727 | 0.086 | 1.816 | |
| DrawPCA | 1.004 | 0.036 | 1.041 | |
| DrawSignal | 0.928 | 0.020 | 0.949 | |
| FirstOrderPhaseCorrection | 0.051 | 0.004 | 0.056 | |
| FourierTransform | 0.036 | 0.005 | 0.042 | |
| GroupDelayCorrection | 0.064 | 0.020 | 0.084 | |
| InternalReferencing | 0.039 | 0.009 | 0.048 | |
| NegativeValuesZeroing | 0.018 | 0.003 | 0.021 | |
| Normalization | 0.014 | 0.000 | 0.015 | |
| PEPSNMR-package | 322.110 | 15.714 | 338.228 | |
| PreprocessingChain | 335.006 | 14.233 | 349.561 | |
| ReadFids | 0.424 | 0.053 | 0.478 | |
| RegionRemoval | 0.016 | 0.002 | 0.016 | |
| SolventSuppression | 0.133 | 0.023 | 0.157 | |
| Warping | 17.145 | 1.526 | 18.686 | |
| WindowSelection | 0.044 | 0.002 | 0.045 | |
| ZeroFilling | 0.129 | 0.002 | 0.130 | |
| ZeroOrderPhaseCorrection | 0.118 | 0.006 | 0.124 | |
| ZoneAggregation | 0.422 | 0.113 | 0.538 | |