| Back to Multiple platform build/check report for BioC 3.14 | 
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This page was generated on 2022-04-13 12:05:42 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 | 
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 | 
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the OLIN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1319/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.72.0  (landing page) Matthias Futschik 
 | nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK |  | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK |  | ||||||||
| Package: OLIN | 
| Version: 1.72.0 | 
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings OLIN_1.72.0.tar.gz | 
| StartedAt: 2022-04-12 08:31:13 -0400 (Tue, 12 Apr 2022) | 
| EndedAt: 2022-04-12 08:32:00 -0400 (Tue, 12 Apr 2022) | 
| EllapsedTime: 46.6 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: OLIN.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:OLIN.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings OLIN_1.72.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/OLIN.Rcheck’
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OLIN/DESCRIPTION’ ... OK
* this is package ‘OLIN’ version ‘1.72.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OLIN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘marray’ ‘methods’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to ‘convert’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: ‘locfit’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for ‘locfit’
ino: no visible global function definition for ‘predict’
lin: no visible global function definition for ‘locfit’
lin: no visible global function definition for ‘predict’
oin: no visible global function definition for ‘gcvplot’
oin: no visible global function definition for ‘locfit’
oin: no visible global function definition for ‘predict’
olin: no visible global function definition for ‘gcv’
olin: no visible global function definition for ‘locfit’
olin: no visible global function definition for ‘predict’
Undefined global functions or variables:
  gcv gcvplot locfit predict
Consider adding
  importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
       user system elapsed
olin 14.368  0.148  14.516
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.14-bioc/meat/OLIN.Rcheck/00check.log’
for details.
OLIN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL OLIN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘OLIN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OLIN)
OLIN.Rcheck/OLIN-Ex.timings
| name | user | system | elapsed | |
| anovaint | 0.096 | 0.008 | 0.105 | |
| anovapin | 0.142 | 0.000 | 0.143 | |
| anovaplate | 0.070 | 0.004 | 0.074 | |
| anovaspatial | 0.176 | 0.012 | 0.188 | |
| backgroundCorrect2 | 0.514 | 0.028 | 0.542 | |
| bas | 0.23 | 0.00 | 0.23 | |
| colorbar.mxy | 0.047 | 0.000 | 0.047 | |
| fdr.int | 0 | 0 | 0 | |
| fdr.int2 | 0 | 0 | 0 | |
| fdr.spatial | 0 | 0 | 0 | |
| fdr.spatial2 | 0 | 0 | 0 | |
| fgbg.visu | 0.103 | 0.004 | 0.107 | |
| ino | 0.291 | 0.008 | 0.299 | |
| lin | 0.571 | 0.012 | 0.583 | |
| m2v | 0.060 | 0.004 | 0.065 | |
| ma.matrix | 0.184 | 0.000 | 0.184 | |
| ma.vector | 0.33 | 0.00 | 0.33 | |
| mxy.abs.plot | 0.253 | 0.004 | 0.257 | |
| mxy.plot | 0.073 | 0.000 | 0.073 | |
| mxy2.plot | 0.049 | 0.004 | 0.053 | |
| oin | 0.837 | 0.004 | 0.840 | |
| olin | 14.368 | 0.148 | 14.516 | |
| p.int | 0 | 0 | 0 | |
| p.int2 | 0 | 0 | 0 | |
| p.spatial | 0 | 0 | 0 | |
| p.spatial2 | 0 | 0 | 0 | |
| sig.mask | 0 | 0 | 0 | |
| sigint.plot | 0 | 0 | 0 | |
| sigint.plot2 | 0 | 0 | 0 | |
| sigxy.plot | 0 | 0 | 0 | |
| sigxy.plot2 | 0 | 0 | 0 | |
| v2m | 0.057 | 0.000 | 0.057 | |