| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:54 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MinimumDistance package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MinimumDistance.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1157/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MinimumDistance 1.38.0 (landing page) Robert Scharpf
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: MinimumDistance |
| Version: 1.38.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MinimumDistance_1.38.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.38.0.zip && rm MinimumDistance_1.38.0.tar.gz MinimumDistance_1.38.0.zip |
| StartedAt: 2022-04-12 07:01:35 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:04:12 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 156.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MinimumDistance_1.38.0.tar.gz && rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MinimumDistance_1.38.0.zip && rm MinimumDistance_1.38.0.tar.gz MinimumDistance_1.38.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
44 938k 44 416k 0 0 584k 0 0:00:01 --:--:-- 0:00:01 584k
100 938k 100 938k 0 0 787k 0 0:00:01 0:00:01 --:--:-- 788k
install for i386
* installing *source* package 'MinimumDistance' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
Creating a new generic function for 'allNames' in package 'MinimumDistance'
in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV"
in method for 'todf' with signature 'object="TrioSet",rangeData="RangedData"': no definition for class "RangedData"
in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV"
** help
*** installing help indices
converting help for package 'MinimumDistance'
finding HTML links ... done
DNAcopyParam html
Defunct html
Deprecated html
FilterParamMD-class html
FilterParamMD html
MAP html
MAP2 html
MDRanges-class html
MinDistExperiment-class html
MinDistExperiment html
MinDistGRanges-class html
MinDistGRanges html
MinDistParam-class html
MinDistParam html
MinDistPosterior-class html
MinimumDistance html
ParentOffspring-class html
ParentOffspringList-class html
Pedigree-class html
Pedigree html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/Pedigree.html
PennParam html
TrioSet-class html
TrioSet html
TrioSetList-class html
TrioSetList html
TrioSetListLD html
acf2 html
calculateMindist html
coercion-methods html
denovo html
exampleTrioSetList html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/trioSetList.html
filterExperiment html
mad2 html
mdLegend html
md_exp html
md_gr html
mindist html
nMAD html
pedigreeGrid html
pedigreeName html
pedigreeViewports html
plotDenovo html
range-ILimit-method html
segment2 html
finding level-2 HTML links ... done
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MinimumDistance' ...
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance'
* MD5 sums
packaged installation of 'MinimumDistance' as MinimumDistance_1.38.0.zip
* DONE (MinimumDistance)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MinimumDistance' successfully unpacked and MD5 sums checked