| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:57 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MSstatsTMTPTM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSstatsTMTPTM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1236/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Devon Kohler
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: MSstatsTMTPTM |
| Version: 1.4.0 |
| Command: chmod a+r MSstatsTMTPTM -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MSstatsTMTPTM |
| StartedAt: 2022-04-12 12:20:51 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 12:21:29 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 37.7 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r MSstatsTMTPTM -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data MSstatsTMTPTM
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* checking for file 'MSstatsTMTPTM/DESCRIPTION' ... OK
* preparing 'MSstatsTMTPTM':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'MSstatsTMTPTM.Rmd' using rmarkdown
Warning: Package 'MSstatsTMTPTM' is deprecated and will be removed from
Bioconductor version 3.15
Quitting from lines 129-144 (MSstatsTMTPTM.Rmd)
Error: processing vignette 'MSstatsTMTPTM.Rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building 'MSstatsTMTPTM.Rmd'
--- re-building 'MSstatsTMTPTM.Workflow.rmd' using rmarkdown
Attaching package: 'MSstats'
The following object is masked from 'package:grDevices':
savePlot
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Quitting from lines 93-107 (MSstatsTMTPTM.Workflow.rmd)
Error: processing vignette 'MSstatsTMTPTM.Workflow.rmd' failed with diagnostics:
Supplied 2 columns to be assigned 3 items. Please see NEWS for v1.12.2.
--- failed re-building 'MSstatsTMTPTM.Workflow.rmd'
SUMMARY: processing the following files failed:
'MSstatsTMTPTM.Rmd' 'MSstatsTMTPTM.Workflow.rmd'
Error: Vignette re-building failed.
Execution halted