Michael Scherer
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/MAGAR |
| git_branch: RELEASE_3_14 |
| git_last_commit: fed74d7 |
| git_last_commit_date: 2021-10-26 13:07:11 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MAGAR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGAR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1035/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MAGAR 1.2.0 (landing page) Michael Scherer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MAGAR |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MAGAR_1.2.0.tar.gz && rm -rf MAGAR.buildbin-libdir && mkdir MAGAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAGAR.buildbin-libdir MAGAR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MAGAR_1.2.0.zip && rm MAGAR_1.2.0.tar.gz MAGAR_1.2.0.zip |
| StartedAt: 2022-04-12 07:18:11 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:21:09 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 177.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MAGAR_1.2.0.tar.gz && rm -rf MAGAR.buildbin-libdir && mkdir MAGAR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MAGAR.buildbin-libdir MAGAR_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MAGAR_1.2.0.zip && rm MAGAR_1.2.0.tar.gz MAGAR_1.2.0.zip
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
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100 394k 100 394k 0 0 387k 0 0:00:01 0:00:01 --:--:-- 387k
install for i386
* installing *source* package 'MAGAR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** help
*** installing help indices
converting help for package 'MAGAR'
finding HTML links ... done
MethQTLInput-class html
finding level-2 HTML links ... done
MethQTLResult-class html
QTL.OPTIONS html
computeCorrelationBlocks html
doImport html
doMethQTL html
doMethQTLChromosome html
filterPval html
getAnno html
getCorrelationBlocks html
getGeno html
getMethData html
getOverlapUniverse html
getOverlappingQTL html
getPheno html
getResult html
getResultGWASMap html
getSamples html
getSpecificQTL html
imputeMeth html
joinMethQTLResult html
loadMethQTLInput html
loadMethQTLResult html
overlapInputs html
overlapQTLs html
qtlAnnotationEnrichment html
qtlBaseSubstitutionEnrichment html
qtlDistanceScatterplot html
qtlGetOption html
qtlJSON2options html
qtlManhattanPlot html
qtlOptions2JSON html
qtlPlotBaseSubstitution html
qtlPlotClusterSize html
qtlPlotSNPCpGInteraction html
qtlSetOption html
qtlTFBSMotifEnrichment html
qtlUpSetPlotCorBlocks html
qtlUpSetPlotTagCpGs html
qtlUpsetPlot html
qtlVennPlot html
saveMethQTLInput html
saveMethQTLResult html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MAGAR' ...
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
* MD5 sums
packaged installation of 'MAGAR' as MAGAR_1.2.0.zip
* DONE (MAGAR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'MAGAR' successfully unpacked and MD5 sums checked