| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:08:15 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MACPET package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1029/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MACPET 1.14.0 (landing page) Ioannis Vardaxis
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: MACPET |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MACPET |
| StartedAt: 2022-04-12 04:10:53 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:11:17 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 24.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MACPET
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘MACPET’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/bigmemory/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/BH/include' -I/usr/local/include -fPIC -Wall -g -O2 -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: use of undeclared identifier 'DOUBLE_EPS'
double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
^
Stage_3_PeakFinderSubFunctions.cpp:1149:43: error: use of undeclared identifier 'DOUBLE_EPS'
double k_g=std::max(std::sqrt(DOUBLE_EPS),Ak_g*(Bk_g-Ck_g));
^
Stage_3_PeakFinderSubFunctions.cpp:1153:75: error: use of undeclared identifier 'DOUBLE_EPS'
my_g[g-1]=Bk_g+std::min(B_my_g[g-1]/C_my_g[g-1],1.0-std::sqrt(DOUBLE_EPS))*k_g;
^
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
^
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: use of undeclared identifier 'DOUBLE_EPS'
if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
^
7 errors generated.
make: *** [Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package ‘MACPET’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/MACPET’