| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:42 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the HiCcompare package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCcompare.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 867/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCcompare 1.16.0 (landing page) John Stansfield
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: HiCcompare |
| Version: 1.16.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.16.0.zip && rm HiCcompare_1.16.0.tar.gz HiCcompare_1.16.0.zip |
| StartedAt: 2022-04-12 05:37:28 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:39:10 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 102.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/HiCcompare_1.16.0.tar.gz && rm -rf HiCcompare.buildbin-libdir && mkdir HiCcompare.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCcompare.buildbin-libdir HiCcompare_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL HiCcompare_1.16.0.zip && rm HiCcompare_1.16.0.tar.gz HiCcompare_1.16.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
16 3211k 16 521k 0 0 584k 0 0:00:05 --:--:-- 0:00:05 584k
61 3211k 61 1976k 0 0 1047k 0 0:00:03 0:00:01 0:00:02 1047k
100 3211k 100 3211k 0 0 1315k 0 0:00:02 0:00:02 --:--:-- 1315k
install for i386
* installing *source* package 'HiCcompare' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to 'ceiling'
** help
*** installing help indices
converting help for package 'HiCcompare'
finding HTML links ... done
HMEC.chr10 html
HMEC.chr22 html
HiCcompare-package html
KRnorm html
MA_norm html
MD.plot1 html
MD.plot2 html
NHEK.chr10 html
NHEK.chr22 html
SCN html
brain_table html
centromere_locations html
cooler html
cooler2bedpe html
cooler2sparse html
create.hic.table html
filter_params html
full2sparse html
get_CNV html
hg19_blacklist html
hg38_blacklist html
hic_compare html
hic_diff html
hic_loess html
hic_simulate html
hicpro2bedpe html
hmec.IS html
make_InteractionSet html
manhattan_plot html
nhek.IS html
remove_centromere html
sim.other.methods html
sim_matrix html
sparse2full html
split_centromere html
total_sum html
visualize_pvals html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HiCcompare' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCcompare' as HiCcompare_1.16.0.zip
* DONE (HiCcompare)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'HiCcompare' successfully unpacked and MD5 sums checked