Jason Ross
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/Harman |
| git_branch: RELEASE_3_14 |
| git_last_commit: 07410e8 |
| git_last_commit_date: 2021-10-26 12:27:33 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:08:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Harman package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Harman.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 852/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Harman 1.22.0 (landing page) Jason Ross
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: Harman |
| Version: 1.22.0 |
| Command: rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir |
| StartedAt: 2022-04-12 20:51:21 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 20:51:44 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 23.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Harman_1.22.0.tgz |
| PackageFileSize: 1.546 MiB |
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### Running command:
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### rm -rf Harman.buildbin-libdir && mkdir Harman.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Harman_1.22.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Harman.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Harman.buildbin-libdir Harman_1.22.0.tar.gz'
>>>>>>>
* installing *source* package ‘Harman’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_ARRAYALIGNEMT=4 -D_USE_RCPP=1 -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "Rcpp:::CxxFlags()"` -I. -fPIC -Wall -g -O2 -c Harman.cpp -o Harman.o
In file included from Harman.cpp:182:
./CSelectRandom.h:394:40: warning: unused variable 'it2' [-Wunused-variable]
std::vector<double>::iterator it1, it2 ;
^
./CSelectRandom.h:392:11: warning: unused variable 'currindex' [-Wunused-variable]
size_t currindex ;
^
./CSelectRandom.h:394:35: warning: unused variable 'it1' [-Wunused-variable]
std::vector<double>::iterator it1, it2 ;
^
./CSelectRandom.h:638:25: warning: unused variable 'ts2' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:639:18: warning: unused variable 'time2' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:638:20: warning: unused variable 'ts1' [-Wunused-variable]
struct timespec ts1, ts2 ;
^
./CSelectRandom.h:639:11: warning: unused variable 'time1' [-Wunused-variable]
double time1, time2 ;
^
./CSelectRandom.h:1019:23: warning: unused variable 'randData2' [-Wunused-variable]
size_t randData1, randData2 ;
^
8 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Harman.so Harman.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/Harman.buildbin-libdir/00LOCK-Harman/00new/Harman/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Harman)
>>>>>>>
>>>>>>> FIXING LINKS FOR Harman.buildbin-libdir/Harman/libs/Harman.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "Harman.buildbin-libdir/Harman/libs/Harman.so"