Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:32 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for FCBF on tokay2


To the developers/maintainers of the FCBF package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FCBF.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 628/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FCBF 2.2.0  (landing page)
Tiago Lubiana
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/FCBF
git_branch: RELEASE_3_14
git_last_commit: d4708d5
git_last_commit_date: 2021-10-26 12:47:18 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: FCBF
Version: 2.2.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FCBF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings FCBF_2.2.0.tar.gz
StartedAt: 2022-04-12 19:32:58 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 19:39:35 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 397.6 seconds
RetCode: 0
Status:   OK  
CheckDir: FCBF.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:FCBF.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings FCBF_2.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/FCBF.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FCBF/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'FCBF' version '2.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FCBF' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
fcbf                                27.43   0.20   28.01
scDengue                            16.36   0.11   16.47
su_plot                             10.00   0.14   10.14
get_su_for_feature_table_and_vector  9.41   0.26    9.67
get_ig_for_feature_table_and_vector  9.11   0.11    9.22
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                     user system elapsed
fcbf                                25.52   0.14   25.66
scDengue                            17.77   0.18   17.96
su_plot                             10.70   0.08   10.78
get_ig_for_feature_table_and_vector 10.24   0.02   10.25
get_su_for_feature_table_and_vector  9.73   0.05    9.78
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Installation output

FCBF.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/FCBF_2.2.0.tar.gz && rm -rf FCBF.buildbin-libdir && mkdir FCBF.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FCBF.buildbin-libdir FCBF_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL FCBF_2.2.0.zip && rm FCBF_2.2.0.tar.gz FCBF_2.2.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 13 2672k   13  371k    0     0   983k      0  0:00:02 --:--:--  0:00:02  983k
 87 2672k   87 2341k    0     0  1698k      0  0:00:01  0:00:01 --:--:-- 1697k
100 2672k  100 2672k    0     0  1791k      0  0:00:01  0:00:01 --:--:-- 1790k

install for i386

* installing *source* package 'FCBF' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'FCBF'
    finding HTML links ... done
    FCBF-deprecated                         html  
    IG-deprecated                           html  
    SU-deprecated                           html  
    discretize_exprs                        html  
    discretize_exprs_supervised             html  
    discretize_gene_supervised              html  
    fcbf                                    html  
    get_IG_for_vector_pair                  html  
    get_SU_for_vector_pair                  html  
    get_ig_for_feature_table_and_vector     html  
    get_su-deprecated                       html  
    get_su_for_feature_table_and_vector     html  
    scDengue                                html  
    su_plot                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'FCBF' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FCBF' as FCBF_2.2.0.zip
* DONE (FCBF)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'FCBF' successfully unpacked and MD5 sums checked

Tests output

FCBF.Rcheck/tests_i386/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(FCBF)
> 
> test_check("FCBF")
[1] "Number of features features =  8"
[1] "Number of prospective features =  7"
[1] "Number of final features =  2"
[1] "Number of features features =  8"
[1] "Number of prospective features =  1"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
> 
> proc.time()
   user  system elapsed 
   7.14    0.67    7.78

FCBF.Rcheck/tests_x64/testthat.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(FCBF)
> 
> test_check("FCBF")
[1] "Number of features features =  8"
[1] "Number of prospective features =  7"
[1] "Number of final features =  2"
[1] "Number of features features =  8"
[1] "Number of prospective features =  1"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 33 ]
> 
> proc.time()
   user  system elapsed 
   7.09    0.34    7.42

Example timings

FCBF.Rcheck/examples_i386/FCBF-Ex.timings

nameusersystemelapsed
discretize_exprs4.540.314.86
discretize_exprs_supervised2.440.332.77
discretize_gene_supervised0.540.050.59
fcbf27.43 0.2028.01
get_IG_for_vector_pair2.730.092.83
get_SU_for_vector_pair3.230.133.50
get_ig_for_feature_table_and_vector9.110.119.22
get_su_for_feature_table_and_vector9.410.269.67
scDengue16.36 0.1116.47
su_plot10.00 0.1410.14

FCBF.Rcheck/examples_x64/FCBF-Ex.timings

nameusersystemelapsed
discretize_exprs4.580.204.79
discretize_exprs_supervised2.260.052.31
discretize_gene_supervised0.370.060.44
fcbf25.52 0.1425.66
get_IG_for_vector_pair2.610.052.65
get_SU_for_vector_pair2.670.042.72
get_ig_for_feature_table_and_vector10.24 0.0210.25
get_su_for_feature_table_and_vector9.730.059.78
scDengue17.77 0.1817.96
su_plot10.70 0.0810.78