##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CellBarcode.buildbin-libdir && mkdir CellBarcode.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CellBarcode.buildbin-libdir CellBarcode_1.0.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'CellBarcode' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib.cpp -o lib.o
lib.cpp: In function 'int hamm_dist(std::__cxx11::string, std::__cxx11::string)':
lib.cpp:59:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (int i=0; i < s1.length(); i++) {
                   ~~^~~~~~~~~~~~~
lib.cpp: In function 'Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, int, int, int, int)':
lib.cpp:123:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (auto i=0; i<seq.size(); i++) {
                    ~^~~~~~~~~~~
lib.cpp:159:18: warning: variable 'flag_is_connetcted' set but not used [-Wunused-but-set-variable]
             bool flag_is_connetcted = false;
                  ^~~~~~~~~~~~~~~~~~
lib.cpp:230:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for (auto i=0; i<res.size(); i++) {
                    ~^~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CellBarcode.dll tmp.def RcppExports.o lib.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CellBarcode.buildbin-libdir/00LOCK-CellBarcode/00new/CellBarcode/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellBarcode'
    finding HTML links ... done
    BarcodeObj                              html  
    CellBarcode                             html  
    bc_2df                                  html  
    bc_auto_cutoff                          html  
    bc_barcodes                             html  
    bc_cleanBc                              html  
    bc_cure_cluster                         html  
    bc_cure_depth                           html  
    bc_cure_umi                             html  
    bc_extract                              html  
    bc_messyBc                              html  
    bc_meta                                 html  
    bc_names                                html  
    bc_obj                                  html  
    bc_plot_mutual                          html  
    bc_plot_pair                            html  
    bc_plot_single                          html  
    bc_seq_filter                           html  
    bc_seq_qc                               html  
    bc_subset                               html  
    bc_summary_barcode                      html  
    bc_summary_seqQc                        html  
    format                                  html  
    show                                    html  
    sub-BarcodeQcSet-ANY-ANY-ANY-method     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'CellBarcode' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c lib.cpp -o lib.o
lib.cpp: In function 'int hamm_dist(std::__cxx11::string, std::__cxx11::string)':
lib.cpp:59:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (int i=0; i < s1.length(); i++) {
                   ~~^~~~~~~~~~~~~
lib.cpp: In function 'Rcpp::List seq_correct(std::vector<std::__cxx11::basic_string<char> >, Rcpp::IntegerVector, int, int, int, int, int, int)':
lib.cpp:123:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (auto i=0; i<seq.size(); i++) {
                    ~^~~~~~~~~~~
lib.cpp:159:18: warning: variable 'flag_is_connetcted' set but not used [-Wunused-but-set-variable]
             bool flag_is_connetcted = false;
                  ^~~~~~~~~~~~~~~~~~
lib.cpp:230:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::pair<std::__cxx11::basic_string<char>, int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for (auto i=0; i<res.size(); i++) {
                    ~^~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o CellBarcode.dll tmp.def RcppExports.o lib.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/CellBarcode.buildbin-libdir/CellBarcode/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellBarcode' as CellBarcode_1.0.0.zip
* DONE (CellBarcode)