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This page was generated on 2021-10-15 15:06:23 -0400 (Fri, 15 Oct 2021).

BUILD results for sitadela on tokay2

To the developers/maintainers of the sitadela package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sitadela.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1783/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
sitadela 1.0.31  (landing page)
Panagiotis Moulos
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/sitadela
git_branch: RELEASE_3_13
git_last_commit: 4dcef7f
git_last_commit_date: 2021-10-13 12:19:09 -0400 (Wed, 13 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  ERROR    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  ERROR    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: sitadela
Version: 1.0.31
Command: chmod a+r sitadela -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sitadela
StartedAt: 2021-10-14 18:22:41 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 18:22:49 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 8.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: sitadela_1.0.31.tar.gz
PackageFileSize: 182.7 KiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r sitadela -R && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data sitadela
###
##############################################################################
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* checking for file 'sitadela/DESCRIPTION' ... OK
* preparing 'sitadela':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'sitadela' ...
** using staged installation
** R
Error in parse(outFile) : 
  C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpYnJJzo/Rbuild285c46c129e1/sitadela/R/query-utils.R:992:9: unexpected symbol
991:         host="genome-mysql.soe.ucsc.edu"
992:         user
             ^
ERROR: unable to collate and parse R files for package 'sitadela'
* removing 'C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpYnJJzo/Rinst285c67383c39/sitadela'
      -----------------------------------
ERROR: package installation failed