| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:50 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the rhdf5filters package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5filters.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1575/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5filters 1.4.0 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: rhdf5filters |
| Version: 1.4.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:rhdf5filters.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings rhdf5filters_1.4.0.tar.gz |
| StartedAt: 2021-10-14 23:10:50 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 23:11:15 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 25.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: rhdf5filters.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:rhdf5filters.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings rhdf5filters_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5filters.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘rhdf5filters/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘rhdf5filters’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘rhdf5filters’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in shell scripts ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... NOTE GNU make is a SystemRequirements. * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking include directives in Makefiles ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/rhdf5filters.Rcheck/00check.log’ for details.
rhdf5filters.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rhdf5filters
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘rhdf5filters’ ...
** using staged installation
configuring the BLOSC filter...
x86_CPU=true
checking for gcc... clang -mmacosx-version-min=10.13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
checking for clang -mmacosx-version-min=10.13 option to accept ISO C89... none needed
checking whether C compiler accepts -msse2... yes
checking whether C compiler accepts -mavx2... yes
checking for gcc __builtin_cpu_init function... (cached) true
checking for x86 sse2 instruction support... yes
checking for x86 avx2 instruction support... no
configure: creating ./config.status
config.status: creating src/blosc/lib/blosc-1.20.1/Makefile
config.status: creating src/blosc/Makefile
configure: BZIP2_LIB=bzip2/libH5Zbz2.so
configure: BLOSC_LIB=blosc/libH5Zblosc.so
configure: LZF_LIB=lzf/libH5Zlzf.so
configure: creating ./config.status
config.status: creating src/blosc/lib/blosc-1.20.1/Makefile
config.status: creating src/blosc/Makefile
config.status: creating src/Makevars
** libs
make -C blosc
make -C lib/snappy-1.1.1
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -c snappy.cc
snappy.cc:567:13: warning: unused function 'ComputeTable' [-Wunused-function]
static void ComputeTable() {
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -c snappy-c.cc
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -c snappy-sinksource.cc
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -c snappy-stubs-internal.cc
make -C lib/lz4-1.9.2
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lz4.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lz4hc.c
make -C lib/zstd-1.4.5
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/debug.c -o common/debug.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/entropy_common.c -o common/entropy_common.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/error_private.c -o common/error_private.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/fse_decompress.c -o common/fse_decompress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -I. -c common/pool.c -o common/pool.o -o common/pool.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/threading.c -o common/threading.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/xxhash.c -o common/xxhash.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c common/zstd_common.c -o common/zstd_common.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/fse_compress.c -o compress/fse_compress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/hist.c -o compress/hist.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/huf_compress.c -o compress/huf_compress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress.c -o compress/zstd_compress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_literals.c -o compress/zstd_compress_literals.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_sequences.c -o compress/zstd_compress_sequences.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_compress_superblock.c -o compress/zstd_compress_superblock.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_double_fast.c -o compress/zstd_double_fast.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_fast.c -o compress/zstd_fast.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_lazy.c -o compress/zstd_lazy.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_ldm.c -o compress/zstd_ldm.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstd_opt.c -o compress/zstd_opt.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c compress/zstdmt_compress.c -o compress/zstdmt_compress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/huf_decompress.c -o decompress/huf_decompress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_ddict.c -o decompress/zstd_ddict.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_decompress.c -o decompress/zstd_decompress.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I. -I./common -DXXH_NAMESPACE=ZSTD_ -c decompress/zstd_decompress_block.c -o decompress/zstd_decompress_block.o
make -C lib/blosc-1.20.1 all
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c bitshuffle-sse2.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c shuffle-sse2.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c bitshuffle-generic.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c shuffle-generic.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -DSHUFFLE_SSE2_ENABLED -c shuffle.c
In file included from shuffle.c:12:
./shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
./shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c blosclz.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c blosc.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I../lz4-1.9.2 -I../snappy-1.1.1 -I../zstd-1.4.5 -msse2 -c fastcopy.c
rm -f libblosc.a
ar cq libblosc.a lib/blosc-1.20.1/blosc.o lib/blosc-1.20.1/shuffle-sse2.o lib/blosc-1.20.1/bitshuffle-generic.o lib/blosc-1.20.1/blosclz.o lib/blosc-1.20.1/shuffle.o lib/blosc-1.20.1/bitshuffle-sse2.o lib/blosc-1.20.1/fastcopy.o lib/blosc-1.20.1/shuffle-generic.o lib/snappy-1.1.1/snappy.o lib/snappy-1.1.1/snappy-c.o lib/snappy-1.1.1/snappy-sinksource.o lib/snappy-1.1.1/snappy-stubs-internal.o lib/lz4-1.9.2/lz4.o lib/lz4-1.9.2/lz4hc.o lib/zstd-1.4.5/common/debug.o lib/zstd-1.4.5/common/entropy_common.o lib/zstd-1.4.5/common/error_private.o lib/zstd-1.4.5/common/fse_decompress.o lib/zstd-1.4.5/common/pool.o lib/zstd-1.4.5/common/threading.o lib/zstd-1.4.5/common/xxhash.o lib/zstd-1.4.5/common/zstd_common.o lib/zstd-1.4.5/compress/fse_compress.o lib/zstd-1.4.5/compress/hist.o lib/zstd-1.4.5/compress/huf_compress.o lib/zstd-1.4.5/compress/zstd_compress.o lib/zstd-1.4.5/compress/zstd_compress_literals.o lib/zstd-1.4.5/compress/zstd_compress_sequences.o lib/zstd-1.4.5/compress/zstd_compress_superblock.o lib/zstd-1.4.5/compress/zstd_double_fast.o lib/zstd-1.4.5/compress/zstd_fast.o lib/zstd-1.4.5/compress/zstd_lazy.o lib/zstd-1.4.5/compress/zstd_ldm.o lib/zstd-1.4.5/compress/zstd_opt.o lib/zstd-1.4.5/compress/zstdmt_compress.o lib/zstd-1.4.5/decompress/huf_decompress.o lib/zstd-1.4.5/decompress/zstd_ddict.o lib/zstd-1.4.5/decompress/zstd_decompress.o lib/zstd-1.4.5/decompress/zstd_decompress_block.o
ranlib libblosc.a
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c -o H5Zblosc.o H5Zblosc.c \
-I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I./lib/blosc-1.20.1
H5Zblosc.c:96:10: warning: unused variable 'errmsg' [-Wunused-variable]
char errmsg[256];
^
1 warning generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -Wall -g -O2 -fPIC -L/usr/local/lib -shared -o libH5Zblosc.so H5Zblosc.o \
libblosc.a -lz
make -C bzip2
make -C bzip2-1.0.8
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c blocksort.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c huffman.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c crctable.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c randtable.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c compress.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c decompress.c
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -D_FILE_OFFSET_BITS=64 -c bzlib.c
rm -f libbz2.a
ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o
ranlib libbz2.a
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -shared H5Zbzip2.c -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" \
-I./bzip2-1.0.8/ ./bzip2-1.0.8/libbz2.a -L/usr/local/lib -o libH5Zbz2.so
make -C lzf
make -C lzf
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lzf_c.c
In file included from lzf_c.c:37:
./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
#if !STRICT_ALIGN
^
./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
lzf_c.c:154:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
#if STRICT_ALIGN
^
./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
lzf_c.c:154:5: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
4 warnings generated.
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -c lzf_d.c
In file included from lzf_d.c:37:
./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
#if !STRICT_ALIGN
^
./lzfP.h:82:25: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
./lzfP.h:138:6: warning: macro expansion producing 'defined' has undefined behavior [-Wexpansion-to-defined]
./lzfP.h:82:44: note: expanded from macro 'STRICT_ALIGN'
# define STRICT_ALIGN !(defined(__i386) || defined (__amd64))
^
2 warnings generated.
rm -f liblzf.a
ar cq liblzf.a lzf_c.o lzf_d.o
clang -mmacosx-version-min=10.13 -Wall -g -O2 -fPIC -shared H5Zlzf.c -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" \
-I./lzf/ ./lzf/liblzf.a -L/usr/local/lib -o libH5Zlzf.so
mkdir -p "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
cp bzip2/libH5Zbz2.so "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
cp blosc/libH5Zblosc.so "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
cp lzf/libH5Zlzf.so "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/lib/"
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include" -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rhdf5lib/include' -I/usr/local/include -Wall -g -O2 -fPIC -Wall -g -O2 -c rhdf5filters.c -o rhdf5filters.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rhdf5filters.so rhdf5filters.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-rhdf5filters/00new/rhdf5filters/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rhdf5filters)
rhdf5filters.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
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> library(testthat)
> library(rhdf5filters)
>
> test_check("rhdf5filters")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 315 ]
>
> proc.time()
user system elapsed
3.538 0.344 3.978
rhdf5filters.Rcheck/rhdf5filters-Ex.timings
| name | user | system | elapsed | |
| hdf5_plugin_path | 0.001 | 0.000 | 0.001 | |