Joselyn Chavez
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/regutools |
| git_branch: RELEASE_3_13 |
| git_last_commit: fe87b86 |
| git_last_commit_date: 2021-05-19 12:52:12 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:18 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the regutools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/regutools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1552/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| regutools 1.4.0 (landing page) Joselyn Chavez
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: regutools |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings regutools_1.4.0.tar.gz |
| StartedAt: 2021-10-15 04:20:51 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 04:37:26 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 995.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: regutools.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:regutools.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings regutools_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/regutools.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'regutools/DESCRIPTION' ... OK
* this is package 'regutools' version '1.4.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'regutools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 12.11 0.35 12.85
build_condition 9.22 1.08 11.17
convert_to_granges 9.11 0.39 9.88
convert_to_biostrings 8.51 0.89 16.40
get_dna_objects 8.30 0.65 9.70
get_gene_synonyms 7.86 0.70 8.96
connect_database 7.28 1.08 8.77
guess_id 7.89 0.37 8.64
get_regulatory_summary 7.91 0.33 8.59
get_dataset 7.93 0.29 8.59
list_datasets 7.68 0.34 8.37
get_regulatory_network 7.38 0.61 9.59
regulondb 7.01 0.87 8.26
get_binding_sites 7.43 0.32 8.86
list_attributes 7.45 0.30 8.11
get_gene_regulators 6.73 0.77 8.11
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot_dna_objects 12.39 0.25 13.01
build_condition 8.35 0.64 9.61
connect_database 8.43 0.36 9.22
get_dna_objects 7.82 0.46 8.61
convert_to_granges 7.79 0.45 8.59
get_regulatory_network 7.59 0.42 9.64
convert_to_biostrings 7.59 0.39 8.38
get_regulatory_summary 7.47 0.41 8.24
get_dataset 7.51 0.29 8.19
list_attributes 7.37 0.33 8.08
get_binding_sites 7.09 0.42 7.88
get_gene_regulators 7.11 0.39 7.89
list_datasets 6.94 0.28 7.58
regulondb 6.99 0.22 7.55
guess_id 6.77 0.40 7.51
get_gene_synonyms 6.73 0.35 7.40
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
regutools.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/regutools_1.4.0.tar.gz && rm -rf regutools.buildbin-libdir && mkdir regutools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=regutools.buildbin-libdir regutools_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL regutools_1.4.0.zip && rm regutools_1.4.0.tar.gz regutools_1.4.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 494k 100 494k 0 0 1588k 0 --:--:-- --:--:-- --:--:-- 1596k
install for i386
* installing *source* package 'regutools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'regutools'
finding HTML links ... done
build_condition html
connect_database html
convert_to_biostrings html
convert_to_granges html
existing_intervals html
existing_partial_match html
get_binding_sites html
get_dataset html
get_dna_objects html
get_gene_regulators html
get_gene_synonyms html
get_regulatory_network html
get_regulatory_summary html
guess_id html
list_attributes html
list_datasets html
non_existing_intervals html
plot_dna_objects html
regulondb-class html
regulondb-methods html
regulondb html
regulondb_result-class html
regutools-package html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'regutools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'regutools' as regutools_1.4.0.zip
* DONE (regutools)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'regutools' successfully unpacked and MD5 sums checked
|
regutools.Rcheck/tests_i386/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
144.62 9.00 163.64
|
regutools.Rcheck/tests_x64/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("regutools")
>
> test_check("regutools")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 110 ]
Warning message:
call dbDisconnect() when finished working with a connection
>
> proc.time()
user system elapsed
133.20 6.90 147.29
|
|
regutools.Rcheck/examples_i386/regutools-Ex.timings
|
regutools.Rcheck/examples_x64/regutools-Ex.timings
|