| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:17 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the qsea package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/qsea.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1476/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| qsea 1.18.0 (landing page) Matthias Lienhard
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: qsea |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/qsea_1.18.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL qsea_1.18.0.zip && rm qsea_1.18.0.tar.gz qsea_1.18.0.zip |
| StartedAt: 2021-10-14 10:24:35 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:27:29 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 174.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/qsea_1.18.0.tar.gz && rm -rf qsea.buildbin-libdir && mkdir qsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=qsea.buildbin-libdir qsea_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL qsea_1.18.0.zip && rm qsea_1.18.0.tar.gz qsea_1.18.0.zip
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install for i386
* installing *source* package 'qsea' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/libs/i386
** R
** inst
** preparing package for lazy loading
No methods found in package 'IRanges' for request: 'values' when loading 'qsea'
** help
*** installing help indices
converting help for package 'qsea'
finding HTML links ... done
addCNV html
addContrast html
addCoverage html
addEnrichmentParameters html
addLibraryFactors html
addNewSamples html
addOffset html
addPatternDensity html
addSeqPref html
createQseaSet html
example html
fitNBglm html
getPCA html
isSignificant html
makeTable html
normMethod html
plotCNV html
plotCoverage html
plotEnrichmentProfile html
plotPCA html
qsea-package html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/qsea.buildbin-libdir/00LOCK-qsea/00new/qsea/help/QSEA.html
qseaGLM-class html
qseaPCA-class html
qseaSet-class html
regionStats html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for request: 'values' when loading 'qsea'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for request: 'values' when loading 'qsea'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'qsea' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c lm.c -o lm.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o qsea.dll tmp.def lm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/qsea.buildbin-libdir/qsea/libs/x64
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'values' when loading 'qsea'
* MD5 sums
packaged installation of 'qsea' as qsea_1.18.0.zip
* DONE (qsea)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'qsea' successfully unpacked and MD5 sums checked