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This page was generated on 2021-10-15 15:05:48 -0400 (Fri, 15 Oct 2021).

INSTALL results for pqsfinder on nebbiolo1

To the developers/maintainers of the pqsfinder package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pqsfinder.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1422/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pqsfinder 2.8.0  (landing page)
Jiri Hon
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/pqsfinder
git_branch: RELEASE_3_13
git_last_commit: 777bb64
git_last_commit_date: 2021-05-19 12:19:51 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: pqsfinder
Version: 2.8.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL pqsfinder
StartedAt: 2021-10-14 06:07:11 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 06:08:29 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 78.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL pqsfinder
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘pqsfinder’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c pqsfinder.cpp -o pqsfinder.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from pqsfinder.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/bits/locale_conv.h:41,
                 from /usr/include/c++/9/locale:43,
                 from /usr/include/c++/9/iomanip:43,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from pqsfinder.cpp:13:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
pqsfinder.cpp: In function ‘void find_all_runs(SEXP, int, std::__cxx11::basic_string<char>::const_iterator, std::__cxx11::basic_string<char>::const_iterator, run_match*, const regex&, const opts_t&, const scoring&, const const_iterator&, size_t, storage&, int&, results&, bool, std::chrono::_V2::system_clock::time_point, int, int, int, int&, bool)’:
pqsfinder.cpp:584:53: warning: ‘loop_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  584 |           pqs_storage, int_cnt, res, (loop_len == 0 ? true : zero_loop),
      |                                      ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/cpp_regex_traits.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/cregex.cpp -o boost_regex/cregex.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/cregex.cpp:22:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/icu.cpp -o boost_regex/icu.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from boost_regex/fileiter.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from boost_regex/fileiter.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/regex.cpp -o boost_regex/regex.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/regex.cpp:24:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/posix_api.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/c_regex_traits.cpp:28:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/wide_posix_api.cpp:25:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/winstances.cpp -o boost_regex/winstances.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/winstances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/instances.cpp -o boost_regex/instances.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex.hpp:32,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex.hpp:31,
                 from boost_regex/instances.cpp:30:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:22,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_traits.hpp:26,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/regex_traits.hpp:27,
                 from boost_regex/regex_traits_defaults.cpp:20:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:42,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
   74 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:465:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  465 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:478:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  478 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:561:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  561 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:570:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  570 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/regex_workaround.hpp:44,
                 from /home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/regex/v4/c_regex_traits.hpp:26,
                 from boost_regex/wc_regex_traits.cpp:76:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/bbs-3.13-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:572:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
  572 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
In file included from /usr/include/c++/9/memory:80,
                 from boost_regex/wc_regex_traits.cpp:23:
/usr/include/c++/9/bits/unique_ptr.h:53:28: note: declared here
   53 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I/usr/local/include   -fpic  -g -O2  -Wall -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
mkdir -p "/home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-pqsfinder/00new/pqsfinder/lib"
ar rs "/home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a" boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/usinstances.o boost_regex/icu.o boost_regex/fileiter.o boost_regex/regex.o boost_regex/posix_api.o boost_regex/c_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o boost_regex/w32_regex_traits.o boost_regex/instances.o boost_regex/regex_traits_defaults.o boost_regex/wc_regex_traits.o boost_regex/regex_debug.o boost_regex/static_mutex.o boost_regex/regex_raw_buffer.o
ar: creating /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o pqsfinder.so RcppExports.o pqsfinder.o /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-pqsfinder/00new/pqsfinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pqsfinder)