Davide Risso
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/mbkmeans |
| git_branch: RELEASE_3_13 |
| git_last_commit: 2d2b03a |
| git_last_commit_date: 2021-05-19 12:42:35 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:10 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the mbkmeans package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mbkmeans.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1050/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mbkmeans 1.8.0 (landing page) Davide Risso
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: mbkmeans |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/mbkmeans_1.8.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.8.0.zip && rm mbkmeans_1.8.0.tar.gz mbkmeans_1.8.0.zip |
| StartedAt: 2021-10-14 08:56:23 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:58:08 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 104.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/mbkmeans_1.8.0.tar.gz && rm -rf mbkmeans.buildbin-libdir && mkdir mbkmeans.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mbkmeans.buildbin-libdir mbkmeans_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL mbkmeans_1.8.0.zip && rm mbkmeans_1.8.0.tar.gz mbkmeans_1.8.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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100 23288 100 23288 0 0 198k 0 --:--:-- --:--:-- --:--:-- 201k
install for i386
* installing *source* package 'mbkmeans' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/mbkmeans.buildbin-libdir/00LOCK-mbkmeans/00new/mbkmeans/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mbkmeans'
finding HTML links ... done
MbkmeansParam html
blocksize html
clusterRows html
compute_wcss html
mbkmeans html
mini_batch html
predict_mini_batch html
predict_mini_batch_r html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'mbkmeans' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rhdf5lib/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/beachmat/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mini_batch.cpp -o mini_batch.o
In file included from mini_batch.cpp:3:
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'arma::mat clustR::ClustHeader::KMEANS_arma(arma::mat&, int, int, bool, std::__cxx11::string, Rcpp::Nullable<Rcpp::Matrix<14> >, int)':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:850:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h: In member function 'Rcpp::List clustR::ClustHeader::GMM_arma(arma::mat&, int, std::__cxx11::string, std::__cxx11::string, int, int, bool, double, int)':
C:/Users/biocbuild/bbs-3.13-bioc/R/library/ClusterR/include/ClusterRHeader.h:1446:14: warning: variable 'status' set but not used [-Wunused-but-set-variable]
bool status;
^~~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o mbkmeans.dll tmp.def RcppExports.o mini_batch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/mbkmeans.buildbin-libdir/mbkmeans/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mbkmeans' as mbkmeans_1.8.0.zip
* DONE (mbkmeans)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'mbkmeans' successfully unpacked and MD5 sums checked