| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:08 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the immunotation package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunotation.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 916/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunotation 1.0.1 (landing page) Katharina Imkeller
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: immunotation |
| Version: 1.0.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/immunotation_1.0.1.tar.gz && rm -rf immunotation.buildbin-libdir && mkdir immunotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=immunotation.buildbin-libdir immunotation_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL immunotation_1.0.1.zip && rm immunotation_1.0.1.tar.gz immunotation_1.0.1.zip |
| StartedAt: 2021-10-14 09:46:34 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:48:26 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 111.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/immunotation_1.0.1.tar.gz && rm -rf immunotation.buildbin-libdir && mkdir immunotation.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=immunotation.buildbin-libdir immunotation_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL immunotation_1.0.1.zip && rm immunotation_1.0.1.tar.gz immunotation_1.0.1.zip
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install for i386
* installing *source* package 'immunotation' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'immunotation'
finding HTML links ... done
assemble_protein_complex html
build_allele_group html
check_geographics html
check_hla_locus html
check_hla_selection html
check_population html
check_sample_size html
check_standard html
create_encode_handle html
decode_MAC html
encode_MAC html
extract_population_id html
extract_population_info html
extract_population_name html
extract_sample_info html
fetch_encoded_MAC html
getURL html
get_G_group html
get_P_group html
get_external_file html
get_mhcpan_input html
get_nb_pages html
get_serotypes html
get_valid_geographics html
get_valid_organisms html
human_protein_complex_table html
load_mro html
mro.obo html
parse_allele_freq_html html
parse_haplotype_freq_html html
plot_allele_frequency html
query_allele_frequencies html
query_haplotype_frequencies html
query_population_detail html
read_complete_freq_table html
read_population_detail html
retrieve_chain_lookup_table html
verify_parameters html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'immunotation' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'immunotation' as immunotation_1.0.1.zip
* DONE (immunotation)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'immunotation' successfully unpacked and MD5 sums checked