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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:geva.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings geva_1.0.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/geva.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'geva/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'geva' version '1.0.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'geva' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
geva.quick    39.77   0.03   39.80
geva.finalize 19.11   0.00   19.11
top.genes     18.26   0.00   18.26
geva.hcluster  7.11   0.02    7.13
geva.cluster   6.47   0.26    6.74
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
               user system elapsed
geva.quick    48.74   0.10   48.83
geva.finalize 22.30   0.03   22.33
top.genes     21.41   0.03   21.44
geva.hcluster  6.89   0.03    6.92
geva.cluster   6.45   0.30    6.75
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/geva_1.0.0.tar.gz && rm -rf geva.buildbin-libdir && mkdir geva.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geva.buildbin-libdir geva_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL geva_1.0.0.zip && rm geva_1.0.0.tar.gz geva_1.0.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 24  409k   24   98k    0     0   497k      0 --:--:-- --:--:-- --:--:--  497k
100  409k  100  409k    0     0  1492k      0 --:--:-- --:--:-- --:--:-- 1492k

install for i386

* installing *source* package 'geva' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'geva'
    finding HTML links ... done
    GEVACluster-class                       html  
    GEVAGroupSet-class                      html  
    GEVAGroupedSummary-class                html  
    GEVAInput-class                         html  
    GEVAQuantiles-class                     html  
    GEVAQuantilesAdjusted-class             html  
    GEVAResults-class                       html  
    GEVASummary-class                       html  
    SVAttribute-class                       html  
    SVTable-class                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/geva.buildbin-libdir/00LOCK-geva/00new/geva/help/svtable.html
    TypedList-class                         html  
    generics                                html  
    geva-package                            html  
    geva.cluster                            html  
    geva.dcluster                           html  
    geva.finalize                           html  
    geva.hcluster                           html  
    geva.ideal.example                      html  
    geva.input.correct                      html  
    geva.merge.input                        html  
    geva.quantiles                          html  
    geva.quick                              html  
    geva.summarize                          html  
    top.genes                               html  
** building package indices
** installing vignettes
   'geva.Rmd' using 'UTF-8' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'geva' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'geva' as geva_1.0.0.zip
* DONE (geva)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'geva' successfully unpacked and MD5 sums checked