Ariful Azad
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/flowMatch |
| git_branch: RELEASE_3_13 |
| git_last_commit: 9bf49d3 |
| git_last_commit_date: 2021-05-19 12:02:03 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the flowMatch package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowMatch.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 654/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowMatch 1.28.0 (landing page) Ariful Azad
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: flowMatch |
| Version: 1.28.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowMatch_1.28.0.tar.gz && rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowMatch_1.28.0.zip && rm flowMatch_1.28.0.tar.gz flowMatch_1.28.0.zip |
| StartedAt: 2021-10-14 07:34:02 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 07:38:17 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 255.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/flowMatch_1.28.0.tar.gz && rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=flowMatch.buildbin-libdir flowMatch_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL flowMatch_1.28.0.zip && rm flowMatch_1.28.0.tar.gz flowMatch_1.28.0.zip
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install for i386
* installing *source* package 'flowMatch' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BipartiteGraph.cpp -o BipartiteGraph.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i=0; i<tree.height.size(); i++)
~^~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
int delta_cx_cy = 0;
^~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)':
MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template2' may be used uninitialized in this function [-Wmaybe-uninitialized]
rearrange(templatePairs, mergedTemplate, template1, template2,lambda);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template1' may be used uninitialized in this function [-Wmaybe-uninitialized]
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i=0; i<mec.sCoverVecVec.size(); i++)
~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:45:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
~^~~~~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:53:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int i=0; i<mec.tCoverVecVec.size(); i++)
~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:55:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
~^~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMatch.buildbin-libdir/00LOCK-flowMatch/00new/flowMatch/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'flowMatch'
finding HTML links ... done
Cluster-class html
ClusterMatch-class html
ClusteredSample-class html
MetaCluster-class html
Template-class html
create.template html
dist.cluster html
dist.matrix html
dist.sample html
dist.template html
flowMatch-package html
mahalanobis.dist html
match.clusters html
symmetric.KL html
template.tree html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'flowMatch' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BipartiteGraph.cpp -o BipartiteGraph.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp: In function 'void update_height(mclust&, std::vector<std::vector<templatePair> >, std::vector<std::vector<BipartiteGraph> >, double)':
MinWghtEdgCoverBipartite.cpp:271:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i=0; i<tree.height.size(); i++)
~^~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'void computeDegConsistencyNew(std::vector<std::vector<templatePair> >&, std::vector<std::vector<BipartiteGraph> >&, double, double)':
MinWghtEdgCoverBipartite.cpp:487:10: warning: variable 'delta_cx_cy' set but not used [-Wunused-but-set-variable]
int delta_cx_cy = 0;
^~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp: In function 'classTemplate buildTemplate(std::vector<std::vector<templatePair> >&, double, mclust&)':
MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template2' may be used uninitialized in this function [-Wmaybe-uninitialized]
rearrange(templatePairs, mergedTemplate, template1, template2,lambda);
~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MinWghtEdgCoverBipartite.cpp:804:12: warning: 'template1' may be used uninitialized in this function [-Wmaybe-uninitialized]
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c flowMatch.cpp -o flowMatch.o
flowMatch.cpp: In function 'Rcpp::List computeMEC(Rcpp::NumericMatrix, double)':
flowMatch.cpp:43:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i=0; i<mec.sCoverVecVec.size(); i++)
~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:45:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int j=0; j<mec.sCoverVecVec[i].size(); j++)
~^~~~~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:53:16: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<int> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int i=0; i<mec.tCoverVecVec.size(); i++)
~^~~~~~~~~~~~~~~~~~~~~~~~
flowMatch.cpp:55:17: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for(int j=0; j<mec.tCoverVecVec[i].size(); j++)
~^~~~~~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o flowMatch.dll tmp.def BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'flowMatch' as flowMatch_1.28.0.zip
* DONE (flowMatch)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'flowMatch' successfully unpacked and MD5 sums checked